Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3133g00015 ATGGATGTGGACATAGTGAAGGCTTCCGCGTGTGACACCACCAACATGGACGTGATGGCAATGATGATGCAAATGGAAAAGTTCTCCGAATTCTGCGACCCTTTTTATACTACCACCCCACCTTACACAGAACCCGACATGTTATCCAGTGGAAGCTCCTCTACAAGTGTTTCCACCATTTTCAATAACGGAACTCCACCGACTCTCGTTGATCCACCACCGCCAAATGTTCTCAATTTTTCCAACAATGACAACGGCCTTATCCAGCAACCTATGACACCCTCTCTCCACCCCGCACAGCCTAGCACCACTTCCTTTCCCCACCCTTCTGAGAAGAAAAACTCTATGGCGGCGATGAGGGAAATGATATTCAGAATAGCGGTGATGCAACCTATTCACATAGACCCTGAATCCATAAAGCCACCGAAGCGAAGGAACGTGAAGATTTCAAAGGATCCGCAGAGCGTGGCGGCGAGGCACAGAAGGGAAAGGATAAGCGAGAAGATAAGGATTCTGCAGAGATTAGTCCCAGGTGGCACCAAGATGGACACGGCTTCGATGCTGGACGAGGCCATTCACTACGTCAAGTTCTTAAAGAAACAGGTCCAGACACTGGAACAGGCTGGGGCAAGTAGACAACACAATCACAATACTGTTGCTGCTGTCGGTTTTCCAATAGGGATGTCTAACTCCAACAACGTTAACTATTCTTCTTTGTTAATGAAGGGTTGCCAACCTTGTCAAGTTTTCGGTTCTACTTCCAAACAATTGCTCAGCTAA 780 0.4756 MDVDIVKASACDTTNMDVMAMMMQMEKFSEFCDPFYTTTPPYTEPDMLSSGSSSTSVSTIFNNGTPPTLVDPPPPNVLNFSNNDNGLIQQPMTPSLHPAQPSTTSFPHPSEKKNSMAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRQHNHNTVAAVGFPIGMSNSNNVNYSSLLMKGCQPCQVFGSTSKQLLS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3133g00015 259 CDD bHLH_AtIND_like 150 206 - -
Vium3133g00015 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 210 IPR036638 GO:0046983
Vium3133g00015 259 SMART finulus 155 204 IPR011598 GO:0046983
Vium3133g00015 259 MobiDBLite consensus disorder prediction 88 111 - -
Vium3133g00015 259 FunFam BHLH transcription factor 152 217 - -
Vium3133g00015 259 Pfam Helix-loop-helix DNA-binding domain 159 198 IPR011598 GO:0046983
Vium3133g00015 259 Coils Coil 188 208 - -
Vium3133g00015 259 Gene3D - 148 220 IPR036638 GO:0046983
Vium3133g00015 259 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 49 249 IPR045843 GO:0003700|GO:0006355
Vium3133g00015 259 MobiDBLite consensus disorder prediction 88 113 - -
Vium3133g00015 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3133g00015 Vium-Chr3133 143309 144569 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3133g00015 116 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 93.478 5.05e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3133g00015 HLH 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3133g00015 - - gmx:100800816 317.775