LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium3133g00006	ATGTCACAGCGTTCGACCCCAGCGCCGTTTTTGACGAAGACGTATTTGCTGGTGGACGACCCTGCCACCGACGACGTTATTTCGTGGAGCGAAACGGGAAACACTTTTGTCGTTTGGAAACACGCCGATTTCGCTATGGATTTGCTTCCCAAATACTTCAAACACAACAATTTCTCCAGCTTCGTCCGCCAACTCAACACCTATGGGTTCCGAAAGATCGTTCCCGACAAATGGGAATTCGCCAACGAGTGTTTCAAGCGAGGGCAGAAGGAGCTCCTCACCGAGATCAAGCGGCGGAAGACGGTGATGCAATCTCCGGCGACTGGAAAATCCGGCGGAGGGAACATCTCAGCGTCGCACTCCGGCGGCGACGACATGGGTTCGACGTCGACGGGATCGGTGGAGGGTGCAACGACGACCCAGTGCGCGGATTTAACGGGCGAGAATGAGAAATTGAAGAAGGACAACGAGAAATTGAGCGGCGAGCTGGCGCGCGCGAAGAAGCAGTGCAACGAGCTGGTGTCGTTTCTGAGGGAGTCACTGAACGTGTGCCCCGATGTGATCAACCGCATCATTCGGCAAGGAACGTGTGGGTCCAGCGACGATGCGGTGCGTTTTGAATGTAGTGGTGATGATGACGACGAAAATGCGGTAGGTGAGTATGAAGGCAAAGTGGATGATGAGAGCGGTGGAGAAAGTTTGAAACTGTTCGGTGTTTGGTTGAAGGGCGAAAATGGGCGCAAGAGAGGGCGCGATGACCCTATCAAGGAGCTGAAAACCCTTGTCTAG	789	0.5412	MSQRSTPAPFLTKTYLLVDDPATDDVISWSETGNTFVVWKHADFAMDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANECFKRGQKELLTEIKRRKTVMQSPATGKSGGGNISASHSGGDDMGSTSTGSVEGATTTQCADLTGENEKLKKDNEKLSGELARAKKQCNELVSFLRESLNVCPDVINRIIRQGTCGSSDDAVRFECSGDDDDENAVGEYEGKVDDESGGESLKLFGVWLKGENGRKRGRDDPIKELKTLV	262

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium3133g00006	262	ProSitePatterns	HSF-type DNA-binding domain signature.	49	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium3133g00006	262	MobiDBLite	consensus disorder prediction	102	136	-	-
	Vium3133g00006	262	Coils	Coil	142	169	-	-
	Vium3133g00006	262	Pfam	HSF-type DNA-binding	10	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium3133g00006	262	SMART	hsfneu3	6	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium3133g00006	262	MobiDBLite	consensus disorder prediction	104	136	-	-
	Vium3133g00006	262	Gene3D	-	2	101	IPR036388	-
	Vium3133g00006	262	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	5	194	IPR027725	-
	Vium3133g00006	262	PRINTS	Heat shock factor (HSF) domain signature	61	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium3133g00006	262	PRINTS	Heat shock factor (HSF) domain signature	48	60	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium3133g00006	262	PRINTS	Heat shock factor (HSF) domain signature	10	33	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium3133g00006	262	FunFam	Heat stress transcription factor B-4	2	100	-	-
	Vium3133g00006	262	SUPERFAMILY	"Winged helix" DNA-binding domain	6	99	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium3133g00006	Vium-Chr3133	39053	42303	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium3133g00006	2	253	HSF	AT4G36990	53.876	8.45e-82	245

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vium3133g00006		HSF_DNA-bind	2.7e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium3133g00006	K09419		-	gmx:100801897	383.259