LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium3133g00005	ATGTCACAGCGTTCGACCCCAGCGCCGTTTTTGACGAAGACGTATTTGCTGGTGGACGACCCTGCCACCGACGACGTTATTTCGTGGAGCGAAACGGGAAACACTTTTGTCGTTTGGAAACACGCCGATTTCGCTATGGATTTGCTTCCCAAATACTTCAAACACAACAATTTCTCCAGCTTCGTCCGCCAACTCAACACCTATGGGTTCCGAAAGATCGTTCCCGACAAATGGGAATTCGCCAACGAGTGTTTCAAGCGAGGGCAGAAGGAGCTCCTCACCGAGATCAAGCGGCGGAAGACGGTGATGCAATCTCCGGCGACTGGAAAATCCGGCGGAGGGAACATCTCAGCGTCGCACTCCGGCGGCGACGACATGGGTTCGACGTCGACGGGATCGGTGGAGGGTGCAACGACGACCCAGTGCGCGGATTTAACGGGCGAGAATGAGAAATTGAAGAAGGACAACGAGAAATTGAGCGGCGAGCTGGCGCGCGCGAAGAAGCAGTGCAACGAGCTGGTGTCGTTTCTGAGGGAGTCACTGAACGTGTGCCCCGATGTGATCAACCGCATCATTCGGCAAGGAACGTGTGGGTCCAGCGACGATGCGGTGCGTTTTGAATGTAGTGGTGATGATGACGACGAAAATGCGGTAGGTGAGTATGAAGGCAAAGTGGATGATGAGAGCGGTGGAGAAAGTTTGAAACTGTTCGGTGTTTGGTTGAAGGGCGAAAATGGGAATGAAAAAGAAAAGGTAAAGATTGGTAGTAACTGCCGCAAGAGAGGGCGCGATGACCCTATCAAGGAGCTGAAAACCCTTGTCTAG	825	0.5309	MSQRSTPAPFLTKTYLLVDDPATDDVISWSETGNTFVVWKHADFAMDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANECFKRGQKELLTEIKRRKTVMQSPATGKSGGGNISASHSGGDDMGSTSTGSVEGATTTQCADLTGENEKLKKDNEKLSGELARAKKQCNELVSFLRESLNVCPDVINRIIRQGTCGSSDDAVRFECSGDDDDENAVGEYEGKVDDESGGESLKLFGVWLKGENGNEKEKVKIGSNCRKRGRDDPIKELKTLV	274

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium3133g00005	274	ProSitePatterns	HSF-type DNA-binding domain signature.	49	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium3133g00005	274	MobiDBLite	consensus disorder prediction	102	136	-	-
	Vium3133g00005	274	Coils	Coil	142	169	-	-
	Vium3133g00005	274	Gene3D	-	2	101	IPR036388	-
	Vium3133g00005	274	SMART	hsfneu3	6	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium3133g00005	274	MobiDBLite	consensus disorder prediction	104	136	-	-
	Vium3133g00005	274	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	5	194	IPR027725	-
	Vium3133g00005	274	Pfam	HSF-type DNA-binding	10	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium3133g00005	274	FunFam	Heat stress transcription factor B-4	2	100	-	-
	Vium3133g00005	274	SUPERFAMILY	"Winged helix" DNA-binding domain	6	99	IPR036390	-
	Vium3133g00005	274	PRINTS	Heat shock factor (HSF) domain signature	61	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium3133g00005	274	PRINTS	Heat shock factor (HSF) domain signature	10	33	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium3133g00005	274	PRINTS	Heat shock factor (HSF) domain signature	48	60	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium3133g00005	Vium-Chr3133	39053	42304	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium3133g00005	2	244	HSF	AT4G36990	54.217	1.82e-80	242

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vium3133g00005		HSF_DNA-bind	3e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium3133g00005	K09419		-	gmx:100801897	378.252