Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium312g00005 ATGGCCTCCGACGGAGCTACTTCGGCGGCGGCGGCGGCGAGTAGGAGAAAGCCGTCGTGGAGGGAGAGAGAGAATAACCGAAGGAGAGAACGGAGGAGAAGAGCGATCGCGGCGAAAATATACTCTGGACTTCGAGCTATGGGGAACTATAACTTGCCGAAGCACTGTGACAACAACGAAGTTCTCAAAGCGCTTTGTGCCGAAGCTGGTTGGTGCGTCGAAGAAGACGGCACTACCTATCGTAAGGGTTGCAAGCCACCTCTGGCCAATGGTGCAGGGAACTCAATGAGAAACGTTCCCTTTTGCTCTTCTCAAAGCCCAAGTCCTTTTTCTTCGTCGTACCCCAGTCCAATTCCTTCATACCAAGTGAGTCCTTCTTCCTCCTCTTTCCCAAGCCCGTTTCGGTTAGATGTGGATAAGGATAATGTATCAAACCTCATTCCATACATTCGCAATGCGTCCCTGTCTCTTCCTCCTCTGAGGATATCAAACAGTGCCCCTGTGACGCCGCCTCTTTCATCACCTACATCAAGAAATCCAAAACCAATTCCTACATGGGAGTCTATTGCCAAAGAATCCATGGCTTCCTTTAATTACCCTCTCTTTGCAGCTTCTGCTCCTGCCAGCCCCACTCACCGTCATCTTTACACCCCGGCCACTATTCCAGAATGTGATGAGTCTGATACTTCCACCTGTGAGTCTAACCAGTGGATGAAATTCCAAGCATTTGGTCCTTCTGCATCTACGTTACCAGCTTCTCCAACTTTCAATCTTGTTAAACCTTTGGTTCCACACCGTGTGCCTGTTAACTCAATCCAAGAGATGAGGACGAGTTCAGAAGAGTTTGGGGTACAGGTAAAGCCTTGGGTTGGGGAGAAAATTCATGAAGTGGCATTGGATGATTTGGAACTAACGCTTGGAAGCGGGAAGGTGCGGAGTTAG 942 0.4947 MASDGATSAAAAASRRKPSWRERENNRRRERRRRAIAAKIYSGLRAMGNYNLPKHCDNNEVLKALCAEAGWCVEEDGTTYRKGCKPPLANGAGNSMRNVPFCSSQSPSPFSSSYPSPIPSYQVSPSSSSFPSPFRLDVDKDNVSNLIPYIRNASLSLPPLRISNSAPVTPPLSSPTSRNPKPIPTWESIAKESMASFNYPLFAASAPASPTHRHLYTPATIPECDESDTSTCESNQWMKFQAFGPSASTLPASPTFNLVKPLVPHRVPVNSIQEMRTSSEEFGVQVKPWVGEKIHEVALDDLELTLGSGKVRS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium312g00005 313 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 13 312 IPR033264 GO:0003700|GO:0006351|GO:0009742
Vium312g00005 313 Pfam BES1/BZR1 plant transcription factor, N-terminal 14 153 IPR008540 -
Vium312g00005 313 MobiDBLite consensus disorder prediction 1 32 - -
Vium312g00005 313 MobiDBLite consensus disorder prediction 16 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium312g00005 Vium-Chr312 47988 50253 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium312g00005 15 312 BZR Transcription Factor Family AT1G75080 66.456 3.38e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vium312g00005 BES1_N 1.2e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium312g00005 K14503 - gmx:100807071 488.804