Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium312g00003 ATGACATCCGACGGAGCTACTTCGGCTGCGGCGGCGGCGGCGGCGAGTAGGAGAAAGCCGTCGTGGAGGGAGAGAGAGAATAACCGTAGGAGAGAACGAAGGCGACGAGCGATCGCGGCGAAAATATACTCTGGACTTCGAGCTCAGGGGAACTATAACTTGCCGAAGCACTGTGACAACAACGAAGTTCTCAAAGCGCTTTGTGCAGAAGCTGGTTGGTGCGTCGAAGAAGACGGAACCACATATCGCAAGGGTTCCAAACCACCTCTGGCCAATGGTGCAGGGAGCTCCATGAGAAACATTTTCTTTTCTTCTTCACAGAATCCAAGTCCGTTTTCTTCGTCGCATCCCAGTCCAATTCCTTCATACCAAGTGAGTCCTTCTTCCTCCTCTTTCCCAAGCCCGTTTCGGTTAGATGTGGATAAGGACAATGTATCAAACCTCATTCCATACATTCGCAATGCCTCTCTGTCTCTTCCTCCTCTGAGGATATCAAACAGTGCCCCTGTGACGCCGCCTCTGTCATCACCTACGTCAAGAAATCCAAAACCAATTCCTACATGGGAGTCCATTGCCAAAGAATCTATGACCTCCTTCAACTACCCTCTCTTTGCAGCTTCTGCTCCTGCTAGCCCCACGCACCGTCACCTTTACACCCCTGCCACTATTCCAGAGTGTGACGAGTCTGATACTTCCACCTGTGAATCTATCCAGTGGGTGAAATTTCAAGCATTTGCTCCTTCTGCATCTGTGTTTCCAACTTCTCCAACCTTCAATCTTGTTAAACCTGTGGTTCCTCCCGGTGTGCCTGATAACTCAATCCAAGAGATGAGGACGATTTCAGAAGAGATTGGAGTACAGGTAATGCCTTGGGTTGGTGAAAGAATTCATGAAGTGGCATTGGATGATTTGGAACTCACTCTTGGAAGCGGGAAGGTGCGGAGTTAG 948 0.4968 MTSDGATSAAAAAAASRRKPSWRERENNRRRERRRRAIAAKIYSGLRAQGNYNLPKHCDNNEVLKALCAEAGWCVEEDGTTYRKGSKPPLANGAGSSMRNIFFSSSQNPSPFSSSHPSPIPSYQVSPSSSSFPSPFRLDVDKDNVSNLIPYIRNASLSLPPLRISNSAPVTPPLSSPTSRNPKPIPTWESIAKESMTSFNYPLFAASAPASPTHRHLYTPATIPECDESDTSTCESIQWVKFQAFAPSASVFPTSPTFNLVKPVVPPGVPDNSIQEMRTISEEIGVQVMPWVGERIHEVALDDLELTLGSGKVRS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium312g00003 315 Pfam BES1/BZR1 plant transcription factor, N-terminal 16 155 IPR008540 -
Vium312g00003 315 MobiDBLite consensus disorder prediction 166 185 - -
Vium312g00003 315 MobiDBLite consensus disorder prediction 1 33 - -
Vium312g00003 315 MobiDBLite consensus disorder prediction 101 126 - -
Vium312g00003 315 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 10 314 IPR033264 GO:0003700|GO:0006351|GO:0009742
Vium312g00003 315 MobiDBLite consensus disorder prediction 18 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium312g00003 Vium-Chr312 15692 18650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium312g00003 1 315 BZR Transcription Factor Family AT1G19350 67.062 6.27e-118 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vium312g00003 BES1_N 1.4e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium312g00003 K14503 - gmx:100807071 496.508