Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3124g00017 ATGGTAGGTTCCAAAATGGGCAGACAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTTATGAATTTCATTCTCAACAATGGTATTCACTGCTGGAGAGCAGTTCCCAAGCTAGCAGGATTGCTGAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGACCAGACCTCAAGAGAGGTGGATTTACTGAAATGGAAGAGGATCAAATTATACAACTACATTCATGTCTCGGTAACAGGTGGTCTAAGATTGCTTCACATTTTCCAGGGAGGACAGATAATGAAATCAAGAACCATTGGAACACAAAGATAAAAAAGAGGTTGAAGGTCCTTGGTTTGGACCCTTTGACCCTGATGCCAATTGAGCAAAAGCAGCAACAGTCTGGTAATGATGACAAACTCAAGACAGAGAAACAGAAAAAAAGCACTTCAAAAGGGTCTGACCAAGGTGTGGATAGCAAACCCTTGGACATGCATGCCACAGGAGAAGAGCCAAAAACAGAAGACAAAATGGAAGAAAAAAAGGTAACGTGGGATGACACCACTGGTTTTCTGAACAATTATGAAATGTTGTGCTCACAGTTGGAGTTGGGGTCATGGTTGAGCCAAGAAACCAAAGCCAGCACCAGCTCTTACTGTAGTTCTTCTTTCTCACTGGATGATTCTAGCAACCTTTCTGTCTGTGAATCCTCTTATCTTCAGGAAAATTCCTTGCAACAATGGGTTGAGGATTTGGATTCCAGTCTCTCATGGGATAGCTTCAATCCACTTCACACTGATTTTCCCTTCTTCGAAAATAGGCAATAA 846 0.4196 MVGSKMGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSCLGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKVLGLDPLTLMPIEQKQQQSGNDDKLKTEKQKKSTSKGSDQGVDSKPLDMHATGEEPKTEDKMEEKKVTWDDTTGFLNNYEMLCSQLELGSWLSQETKASTSSYCSSSFSLDDSSNLSVCESSYLQENSLQQWVEDLDSSLSWDSFNPLHTDFPFFENRQ 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3124g00017 281 Gene3D - 16 72 - -
Vium3124g00017 281 MobiDBLite consensus disorder prediction 134 187 - -
Vium3124g00017 281 MobiDBLite consensus disorder prediction 170 187 - -
Vium3124g00017 281 FunFam MYB transcription factor 73 134 - -
Vium3124g00017 281 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Vium3124g00017 281 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Vium3124g00017 281 MobiDBLite consensus disorder prediction 141 160 - -
Vium3124g00017 281 CDD SANT 75 115 IPR001005 -
Vium3124g00017 281 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 241 - -
Vium3124g00017 281 Gene3D - 74 162 - -
Vium3124g00017 281 SMART sant 18 68 IPR001005 -
Vium3124g00017 281 SMART sant 71 119 IPR001005 -
Vium3124g00017 281 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Vium3124g00017 281 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Vium3124g00017 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Vium3124g00017 281 FunFam MYB transcription factor 16 72 - -
Vium3124g00017 281 SUPERFAMILY Homeodomain-like 16 113 IPR009057 -
Vium3124g00017 281 CDD SANT 21 66 IPR001005 -
Vium3124g00017 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3124g00017 Vium-Chr3124 146582 148047 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3124g00017 6 162 MYB Transcription Factor Family AT5G16600 67.273 1.22e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium3124g00017 Myb_DNA-binding 5.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3124g00017 K09422 - gmx:100819471 472.241