Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3124g00016 ATGGTGAAAGATGAAAAGAGGGAATTGCTTACAAGGACAAAGCTTGCCAGCCATTTGGGACCAGGGAATCCCATCAAACTCAATATTTTTATGGTGCTTGCAAGGAATGGTATCAACAAAAGAAGATTTTGGGTGCAAATAATGAAAAATTGTCAACAGGGTGGACTCAGGACTCAGAGATGGTTATTTTTTCTTGCATTGAAAAATTTTGTGGTTGAACAGAAACTCTTGATCTTGTCTGAAGAAGGGTGGTGGGTAGGTTCCAAAATGGGCAGACAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTTATGAATTTCATTCTCAACAATGGTATTCACTGCTGGAGAGCAGTTCCCAAGCTAGCAGGATTGCTGAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGACCAGACCTCAAGAGAGGTGGATTTACTGAAATGGAAGAGGATCAAATTATACAACTACATTCATGTCTCGGTAACAGGTGGTCTAAGATTGCTTCACATTTTCCAGGGAGGACAGATAATGAAATCAAGAACCATTGGAACACAAAGATAAAAAAGAGGTTGAAGGTCCTTGGTTTGGACCCTTTGACCCTGATGCCAATTGAGCAAAAGCAGCAACAGTCTGGTAATGATGACAAACTCAAGACAGAGAAACAGAAAAAAAGCACTTCAAAAGGGTCTGACCAAGGTGTGGATAGCAAACCCTTGGACATGCATGCCACAGGAGAAGAGCCAAAAACAGAAGACAAAATGGAAGAAAAAAAGGTAACGTGGGATGACACCACTGGTTTTCTGAACAATTATGAAATGTTGTGCTCACAGTTGGAGTTGGGGTCATGGTTGAGCCAAGAAACCAAAGCCAGCACCAGCTCTTACTGTAGTTCTTCTTTCTCACTGGATGATTCTAGCAACCTTTCTGTCTGTGAATCCTCTTATCTTCAGGAAAATTCCTTGCAACAATGGGTTGAGGATTTGGATTCCAGTCTCTCATGGGATAGCTTCAATCCACTTCACACTGATTTTCCCTTCTTCGAAAATAGGCAATAA 1098 0.4135 MVKDEKRELLTRTKLASHLGPGNPIKLNIFMVLARNGINKRRFWVQIMKNCQQGGLRTQRWLFFLALKNFVVEQKLLILSEEGWWVGSKMGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSCLGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKVLGLDPLTLMPIEQKQQQSGNDDKLKTEKQKKSTSKGSDQGVDSKPLDMHATGEEPKTEDKMEEKKVTWDDTTGFLNNYEMLCSQLELGSWLSQETKASTSSYCSSSFSLDDSSNLSVCESSYLQENSLQQWVEDLDSSLSWDSFNPLHTDFPFFENRQ 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3124g00016 365 CDD SANT 105 150 IPR001005 -
Vium3124g00016 365 MobiDBLite consensus disorder prediction 218 271 - -
Vium3124g00016 365 ProSiteProfiles Myb-like domain profile. 98 150 IPR001005 -
Vium3124g00016 365 SMART sant 155 203 IPR001005 -
Vium3124g00016 365 SMART sant 102 152 IPR001005 -
Vium3124g00016 365 Pfam Myb-like DNA-binding domain 103 150 IPR001005 -
Vium3124g00016 365 Pfam Myb-like DNA-binding domain 156 199 IPR001005 -
Vium3124g00016 365 FunFam MYB transcription factor 100 156 - -
Vium3124g00016 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 151 205 IPR017930 -
Vium3124g00016 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 150 IPR017930 -
Vium3124g00016 365 MobiDBLite consensus disorder prediction 254 271 - -
Vium3124g00016 365 MobiDBLite consensus disorder prediction 225 244 - -
Vium3124g00016 365 SUPERFAMILY Homeodomain-like 100 197 IPR009057 -
Vium3124g00016 365 Gene3D - 158 246 - -
Vium3124g00016 365 FunFam MYB transcription factor 157 218 - -
Vium3124g00016 365 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 90 324 - -
Vium3124g00016 365 CDD SANT 159 199 IPR001005 -
Vium3124g00016 365 ProSiteProfiles Myb-like domain profile. 151 201 IPR001005 -
Vium3124g00016 365 Gene3D - 100 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3124g00016 Vium-Chr3124 146582 148347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3124g00016 90 246 MYB Transcription Factor Family AT5G16600 67.273 2.77e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium3124g00016 Myb_DNA-binding 7.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3124g00016 K09422 - gmx:100819471 472.241