Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3124g00015 ATGGTGAAAGATGAAAAGAGGGAATTGCTTACAAGGACAAAGCTTGCCAGCCATTTGGGACCAGGGAATCCCATCAAACTCAATATTTTTATGGTGCTTGCAAGGAATGGTATCAACAAAAGAAGATTTTGGGTGCAAATAATGAAAAATTGTCAACAGGGTGGACTCAGGACTCAGAGATGGTTATTTTTTCTTGCATTGAAAAATTTTGTGGTTGAACAGAAACTCTTGATCTTGTCTGAAGAAGGGTGGTGGGTAGGTTCCAAAATGGGCAGACAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTTATGAATTTCATTCTCAACAATGGTATTCACTGCTGGAGAGCAGTTCCCAAGCTAGCAGGATTGCTGAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGACCAGACCTCAAGAGAGGTGGATTTACTGAAATGGAAGAGGATCAAATTATACAACTACATTCATGTCTCGGTAACAGGTGGTCTAAGATTGCTTCACATTTTCCAGGGAGGACAGATAATGAAATCAAGAACCATTGGAACACAAAGATAAAAAAGAGGTTGAAGGTCCTTGGTTTGGACCCTTTGACCCTGATGCCAATTGAGCAAAAGCAGCAACAGTCTGGTAATGATGACAAACTCAAGACAGAGAAACAGAAAAAAAGCACTTCAAAAGGGTCTGACCAAGGTGTGGATAGCAAACCCTTGGACATGCATGCCACAGGAGAAGAGCCAAAAACAGAAGACAAAATGGAAGAAAAAAAGGTAACGTGGGATGACACCACTGGTTTTCTGAACAATTATGAAATGTTGTGCTCACAGTTGGAGTTGGGGTCATGGTTGAGCCAAGAAACCAAAGCCAGCACCAGCTCTTACTGTAGTTCTTCTTTCTCACTGGATGATTCTAGCAACCTTTCCTTGCAACAATGGGTTGAGGATTTGGATTCCAGTCTCTCATGGGATAGCTTCAATCCACTTCACACTGATTTTCCCTTCTTCGAAAATAGGCAATAA 1065 0.415 MVKDEKRELLTRTKLASHLGPGNPIKLNIFMVLARNGINKRRFWVQIMKNCQQGGLRTQRWLFFLALKNFVVEQKLLILSEEGWWVGSKMGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSCLGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKVLGLDPLTLMPIEQKQQQSGNDDKLKTEKQKKSTSKGSDQGVDSKPLDMHATGEEPKTEDKMEEKKVTWDDTTGFLNNYEMLCSQLELGSWLSQETKASTSSYCSSSFSLDDSSNLSLQQWVEDLDSSLSWDSFNPLHTDFPFFENRQ 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3124g00015 354 CDD SANT 105 150 IPR001005 -
Vium3124g00015 354 MobiDBLite consensus disorder prediction 218 271 - -
Vium3124g00015 354 FunFam MYB transcription factor 100 156 - -
Vium3124g00015 354 ProSiteProfiles Myb-like domain profile. 98 150 IPR001005 -
Vium3124g00015 354 SMART sant 155 203 IPR001005 -
Vium3124g00015 354 SMART sant 102 152 IPR001005 -
Vium3124g00015 354 Pfam Myb-like DNA-binding domain 103 150 IPR001005 -
Vium3124g00015 354 Pfam Myb-like DNA-binding domain 156 199 IPR001005 -
Vium3124g00015 354 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 90 299 - -
Vium3124g00015 354 SUPERFAMILY Homeodomain-like 100 197 IPR009057 -
Vium3124g00015 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 151 205 IPR017930 -
Vium3124g00015 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 150 IPR017930 -
Vium3124g00015 354 MobiDBLite consensus disorder prediction 254 271 - -
Vium3124g00015 354 MobiDBLite consensus disorder prediction 225 244 - -
Vium3124g00015 354 Gene3D - 100 156 - -
Vium3124g00015 354 Gene3D - 158 246 - -
Vium3124g00015 354 CDD SANT 159 199 IPR001005 -
Vium3124g00015 354 ProSiteProfiles Myb-like domain profile. 151 201 IPR001005 -
Vium3124g00015 354 FunFam MYB transcription factor 157 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3124g00015 Vium-Chr3124 146582 148349 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3124g00015 90 246 MYB Transcription Factor Family AT5G16600 67.273 2.65e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium3124g00015 Myb_DNA-binding 7.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3124g00015 K09422 - gmx:100819471 442.195