Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3124g00007 ATGGAGGGTACCGAACCTGATATAGAAAGGCATCCCCTGGAAGATGCAGAAAATGAATGTCCAATATCTGCCGAGGTGGTTTTGGGGCAAGAGAGTCAAACTAGGAACCCCTGTGATTCTTCTGTAGAAGACACTATTAAGGTCATTGACACTGAGAATGAGTGTACAGGTCCAAACGTTTGTGCTGTTGACCATAGTCATATTAAAATTAATGATGAATGCCAGACATCAAATATTTTCCATGATGACAAATTTCATATTGATAATGTCAGTAGTGGAGAGTTGTGCGAGAAACACTGTCCGAGTACTGAAGTGAAAAACGAGAACGAAATATATGTGGCTCCAAAGATTGGTATGGAGTTTGAATCAGAAGACAATGCTTACAAATGTTATAGCATGTATGCTGTCCTGAAAGGTTTTAGCATAAGAAAGGATTTTGTCAACAAAAGTAGGATAAATGGTGCAGTGGTATCCAGAAGATACACCTGCCACAGACAGGGTTATCGGCCAAACAAAAATGGTACATACTTGAGGAAATTTCAGCAGGAAACAAGAACTGGTTGCTTGGCACACATGACTATTGCTCGTCAGCCGAATGGAAAATTTCAGGTCACTCATTTTGAAACTGAGCACAATCATGAGTTTGTAAAACCCTGTACTGCTCATATGTTACCATCACAGAAAAAATTGAGTTTTGCTCAAGCTATTGAAGCAAACTTAACTGTATCCGGGTTGGATGAGACACCAAAACTGGGAATGGGATTTGACTCAGACGAGCATGCATATGAATTTTATAATACATATGCTGGACGAGTAGGTTTTAGTGTAAGAAAAGATTATGTAAATAGGAGTAAAATTGATGGTGCTGTGGCATCTCGACGATTTACTTGCTTCAGAGAAGGTTATCGGCAGAAAGACAAACAAGATATGAACACAAAGAAACCTCGGAAGGATACTAGAATTGGATGTTTGGCCCAAATGGTTATTTCTCGCCAACCTGATGGTATGTATTATGTTACTCACTTTGAGGAAAAGCATAATCATGAACTTGTTGCTGCATGTAGAGTGCACATGTTAAGATCACAACAAAAGGGGTTAACTGCTACTCAAATTGAAAAGAACATAGTGGATGGATCCAACGTACTGCCTACATCAACCTCTGAAACCAATTGCAAGGCTCGTCTGGATTATGATCCCATGAACCATGAATATAAACTACCTTTCAAATGTTCTAGCAAAGTGGAGGGAGAAATTGAAAAGATTAAGCTTCACTTCCAAATCAAGCAAAGAAAGAATCCTTCTTTCTTTTACGCATTCCAGCTTGATGCTGATGATCAAATAACTAATATATTTTGGGCTGATACAAAGATGATTATAGATTACACTGATTTTGGTGATGTTGTTTGTTTTGATAGCAGTTATAAATACTATAAGGACTCCTGGCCATTTGTTCCATTCCTTGGTATAAATAATCACCAGCAAATGACTATCTTTGGGGTTGCACTTCTTCAGAATGAATCTGTAGAATCTTTGAAGTGGCTGTTTATAGTTTTCCTTGAGGCAATGTCTAGAAGAAAGCCAAAGACGATACTTACAGATCTAGATGTTGTAACAGCTGAAGCAATCAATGTCATACTACCCCAAACAAATCATCGAGTTTGTGTATGGCATGTCTATCAAGATGCCCTCAAGCATCTGAGTCATGTTTCTGCTGGATCTGATTCTTTCGTAAATGATTTAAGAAGCTGCCTTTTTCATCACAAGGAGGAGGATTATTTTGTTAATGAATGGAATGCTCTCCTGGACAAATATAATCTTTGGGAAAATGAATGGTTGCAACAAATATTTGGAAGTAGACATCGATGGGCTATAGCATATGGAAGACAATATTTTTGTGCTGACATAGAAAGCATGCTACTGAGACAAAATCTTACTGGCAACCTGAAAAGGTACCTAAAGCATGACTCCGACATTCTTCCACTTTTCAAGTATCTTGTTAAGCTTGTTACTGATTGGCACTACAAGGAATTAGAAGCCAATTATGACATGAACCAGCGTATGCCACCGTTGTTGGGGGATATCATTACGTTAAAGCATGCAAGAGCTCCATACACACCAAAGATATTTGAGTTATTTCAGAAAGAATATGAAGCATGTTTGAATCTAGTGATAAAGCATTGCACTGAAAATGGATCATTTTATAATTATAAAGTTAGCGTATATGAACATGCACAGGAGTATTCTGTTACATTTGATTCTTCTGATGAGACAATCAGTTGTAGCTGTATGAAATTTGAGTACGTGGGGATATTATGCTGCCATGCATTAAAAGTTCTTGACTATGTGAACATAAGGATTGTTCCATCTCGGTACATATTAAAGAGATGGACAAAAGATGCTAGAGTTTGA 2409 0.3778 MEGTEPDIERHPLEDAENECPISAEVVLGQESQTRNPCDSSVEDTIKVIDTENECTGPNVCAVDHSHIKINDECQTSNIFHDDKFHIDNVSSGELCEKHCPSTEVKNENEIYVAPKIGMEFESEDNAYKCYSMYAVLKGFSIRKDFVNKSRINGAVVSRRYTCHRQGYRPNKNGTYLRKFQQETRTGCLAHMTIARQPNGKFQVTHFETEHNHEFVKPCTAHMLPSQKKLSFAQAIEANLTVSGLDETPKLGMGFDSDEHAYEFYNTYAGRVGFSVRKDYVNRSKIDGAVASRRFTCFREGYRQKDKQDMNTKKPRKDTRIGCLAQMVISRQPDGMYYVTHFEEKHNHELVAACRVHMLRSQQKGLTATQIEKNIVDGSNVLPTSTSETNCKARLDYDPMNHEYKLPFKCSSKVEGEIEKIKLHFQIKQRKNPSFFYAFQLDADDQITNIFWADTKMIIDYTDFGDVVCFDSSYKYYKDSWPFVPFLGINNHQQMTIFGVALLQNESVESLKWLFIVFLEAMSRRKPKTILTDLDVVTAEAINVILPQTNHRVCVWHVYQDALKHLSHVSAGSDSFVNDLRSCLFHHKEEDYFVNEWNALLDKYNLWENEWLQQIFGSRHRWAIAYGRQYFCADIESMLLRQNLTGNLKRYLKHDSDILPLFKYLVKLVTDWHYKELEANYDMNQRMPPLLGDIITLKHARAPYTPKIFELFQKEYEACLNLVIKHCTENGSFYNYKVSVYEHAQEYSVTFDSSDETISCSCMKFEYVGILCCHALKVLDYVNIRIVPSRYILKRWTKDARV 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3124g00007 802 Pfam FAR1 DNA-binding domain 131 216 IPR004330 -
Vium3124g00007 802 Pfam FAR1 DNA-binding domain 263 351 IPR004330 -
Vium3124g00007 802 Pfam SWIM zinc finger 744 782 IPR007527 GO:0008270
Vium3124g00007 802 ProSiteProfiles Zinc finger SWIM-type profile. 747 783 IPR007527 GO:0008270
Vium3124g00007 802 Pfam MULE transposase domain 467 560 IPR018289 -
Vium3124g00007 802 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 97 234 IPR031052 GO:0006355
Vium3124g00007 802 SMART 26again6 758 785 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3124g00007 Vium-Chr3124 72803 78146 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium3124g00007 MULE 7.2e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3124g00007 K17604 - gmx:102659753 1389.79