Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3124g00005 ATGCAATCATCTCCTTCTTCCTTCCCTTACAGATTCAGATATGATGTGTTCCTCAGTTTTCGAGGGAAAGATACCCGCCAAGGTTTCACAGGAAATCTCTACAAATCTCTTTGTGACAGAGGAATTCACACCTTCATCGATGACCACCACCTTCCCAGAGGAGACCAGATTTCCTCTGAACTTGAGAACGCAATCCAAGACTCCAGAATTTTCATCATTGTCCTCTCTCAAAACTATGCATCTTCCTCCTTCTGCTTAAATGAACTTCATTACATCCTGAGGTTTATTAAGCATAAGGGTCGGTTGGTTTTCCCAGTTTTTTATGGAGTTGACCCTTCTCATGTGAGACACCACACAGGTACTTTTGGAGAGGCGTTGGCTCATCATCAAAATAATTCTTATTACAACTGGGAGAAGCTTGAGACATGGAAGATGGCTCTGCATCAAGTGGCTAACTTGTCTGGCTACCATTTCAAACATGGGGAAGGATATGAATATGAGTTCATTGAGAGGATTGTTGAGTTGGTCTGCAGCAAGATTAACCGTGCTGCTTTACATGTTGCGGATTACCCAGTTGGATTAGAGTCACAGGTGCTGGAAGTAAAGTTGCTTCTAGATGTTGGATGTGATGATGTTGTCCACATGGTGGGGTTCCACGGACTTGGTGGAGTAGGGAAAACGACACTTGCTGCTGCAGTTTATAATTCCATTGCTGACCATTTTGAAGCTTTATGTTTTCTTGAAAACGTGAGAGAAACTTCGAGCAAACATGGGTTACTGCATCTCCAAAGCAACCTTCTTTCTGAAACAGTAGGAGAGATTAAGTTAACAAGTGTCAAAAAGGGAATTTCTGTAATACAGCACAGGCTCCAGCAAAAGAAGGTTCTTTTGATTCTAGATGATGTTGACAAAGAGGAACAACTAAAGGCACTTGCTGGAAGACCACATTGGTTTGGTCTAGGCAGTAGAGTCATCATAACAACTCGAGACAAACAGTTGCTAAAATGTCATCGGGTTAAAAGAACATACGAAGTGAACGAATTGAATGAGGAAAATGCTCTTGAATTACTTACTTGGAAAGCTTTCAAGTTTGAACAATTTGATCCAAGTTACAAGGATGTTTTGAATCTGGCAGTAACTTATGCCTCGGGCCTTCCATTGGCTTTGGAAGTAATAGGTTCCAACTTATGTGGAAGAAATATAGAACAATGGAAGTATGCTTTGGATAAGTACAAGAAAATTCCTAAAATGGATATCCAGGACACACTTAAAGTGAGTTATGATGCTTTGGAAGAAGATGAACAGAGTGTTTTTCTTGACATTGCTTGTTTCTTCAAAAACTATGATTTGGCAGAGGTCGAAGATATACTTCGTGCTCATCATGGTCATAGCATTAAACATCATATTGACGTGTTGGTCGAAAAATCTTTCATAAAGATTAGTTTGGATGGTAAAGTGACACTACATAATCTGATAGAAGACATGGGTAGAGAAATTGTGCGGAGAGAATCACCCAAAGAGCCTGGGAAACGTAGCAGGTTATGGTTCCCTCAGGATATAGTTCAAGTTTTAGAAGACAATAAGGGAACTGGTCAGATTGAAATCATATGCGTAGATTTCCCTTCATTTGAAGAAGTGGAAATAGAATGGGATGGAGATGCCTTCAAAAAGATGAAAAATCTCAGAACACTTATTATCAGAAATTGTCATTTCTCCAAAGGTCCAAAACATCTTCCTAATTCTTTGAGAGTGATGGAATGGTGGAGATATCCTTCACAGAATTTTCCACAGGATTTTCATCCGAAGAAACTTGCTGTATTCAAGTTACCATACTGTGAGTTTACATCACTAGAGTTGACTGACTTATTAAGACAGAAGTTTGTGAATATGACAAGTTTAAATTTTGACGAATGTCGATATTTGAAACAGATACCTGATGTATCTTGTCTCATACATTTGGAAAATTTGTCATTTCGATGGTGTCCAAAATTATCTTCACTTCACTACTCAGTCGGGTTCTTGGAAAAACTTAAAATCTTAGATGCAGAAGGTTGCTCCAGGCTCAAGAGTTTTCCTCCAATCAAGTTAACTTCTCTTGAGCAACTCAAACTTCGGTATTGTCACAGTCTTCAAAATTTTCCAGAAGTATTAGGAAACATGGAATATGTAAGAGAACTTGACTTGAAAGAAACTCCTGTAAAAAAATTCCCACCTTCATTTCGAAATCTTACACGGCTGCAAAAGTTACATCTGTGTTTGAGTGTTCGAGTAATGAAAAGTGGTTGTGATGGCCTTCCCCTTTCAAGCATTTGCATGATGCCAGAACTGGTTGATATTGCAGCAAATGAATGGGAAGGGGGGCTTTTCCGTGAAGCCAATGAGGGTGCAGAAAAAGTGAGCTCAATCTTGTCTACAAACGTTCAATATCTTCAACTCAGATGCTGCAACTTAACAGATGATTTTTTTCCAACACTTCTCCCATGGTTTGCTAATATGAAGAACTTAGACCTATCAGGGAATAATTTCACAGTCATTCCAGAATGCATCAAAGAATTCCACTTTTTAACAAGGCTTAATTTGAACTTCTGTGAGCGACTTCAAGAAATTAGAGGCATTCCTCCAAACCTGAAACATTTCTTTGCAATAGATTGTCAATCCTTGACTTCCTCATGTAGAAGCATGTTACTAAATCAGGAACTGCATGAGGCTGGAAGCACCTTCTTTTATTTGCCAGGAGCCAAGATTGCAGAGTGGTTTGAGATTCAAACATTGGAACTGCCAATTTCTTTCTGGTTTCGTGGCAAACTCCCAGCCATGGCTATTTGTCTTGCAATGGAACGAGTGTGGGAGTATTCCTCATCAGAAGGTGGTAAATACAGACCCTTGGTGATCCATAGCACATTTAGACTCATGTCACCCATTGTGATCATCAATGGCAACGAACATTTGTTAGAAACTTGGGAGATGTTGGATGATTGTACTTGTGTTTTTGACCTGAGGGAGACAAAACTGAAAAATGATTTAGATGAAGAACTTGTGGAAAACGAATGGAACCATGCAGAGGTTACGTGTCGATACGTGAGTTTAGACCAAACCTTAATAAAACATGGAATCCATGTATTTAAACAGGAAAGTAGCGTGGAAGAGATTCGATTCACTGATCCTTCCAGAAAAAGAAATCTTGATGATGAACTCAATAGCTCAAAATCACAGCAGCAACAGTTGCTGAAAAAACAAAGATGA 3243 0.3925 MQSSPSSFPYRFRYDVFLSFRGKDTRQGFTGNLYKSLCDRGIHTFIDDHHLPRGDQISSELENAIQDSRIFIIVLSQNYASSSFCLNELHYILRFIKHKGRLVFPVFYGVDPSHVRHHTGTFGEALAHHQNNSYYNWEKLETWKMALHQVANLSGYHFKHGEGYEYEFIERIVELVCSKINRAALHVADYPVGLESQVLEVKLLLDVGCDDVVHMVGFHGLGGVGKTTLAAAVYNSIADHFEALCFLENVRETSSKHGLLHLQSNLLSETVGEIKLTSVKKGISVIQHRLQQKKVLLILDDVDKEEQLKALAGRPHWFGLGSRVIITTRDKQLLKCHRVKRTYEVNELNEENALELLTWKAFKFEQFDPSYKDVLNLAVTYASGLPLALEVIGSNLCGRNIEQWKYALDKYKKIPKMDIQDTLKVSYDALEEDEQSVFLDIACFFKNYDLAEVEDILRAHHGHSIKHHIDVLVEKSFIKISLDGKVTLHNLIEDMGREIVRRESPKEPGKRSRLWFPQDIVQVLEDNKGTGQIEIICVDFPSFEEVEIEWDGDAFKKMKNLRTLIIRNCHFSKGPKHLPNSLRVMEWWRYPSQNFPQDFHPKKLAVFKLPYCEFTSLELTDLLRQKFVNMTSLNFDECRYLKQIPDVSCLIHLENLSFRWCPKLSSLHYSVGFLEKLKILDAEGCSRLKSFPPIKLTSLEQLKLRYCHSLQNFPEVLGNMEYVRELDLKETPVKKFPPSFRNLTRLQKLHLCLSVRVMKSGCDGLPLSSICMMPELVDIAANEWEGGLFREANEGAEKVSSILSTNVQYLQLRCCNLTDDFFPTLLPWFANMKNLDLSGNNFTVIPECIKEFHFLTRLNLNFCERLQEIRGIPPNLKHFFAIDCQSLTSSCRSMLLNQELHEAGSTFFYLPGAKIAEWFEIQTLELPISFWFRGKLPAMAICLAMERVWEYSSSEGGKYRPLVIHSTFRLMSPIVIINGNEHLLETWEMLDDCTCVFDLRETKLKNDLDEELVENEWNHAEVTCRYVSLDQTLIKHGIHVFKQESSVEEIRFTDPSRKRNLDDELNSSKSQQQQLLKKQR 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3124g00005 1080 Gene3D - 347 431 IPR042197 -
Vium3124g00005 1080 SUPERFAMILY "Winged helix" DNA-binding domain 418 525 IPR036390 -
Vium3124g00005 1080 Coils Coil 1058 1078 - -
Vium3124g00005 1080 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 872 IPR044974 GO:0006952
Vium3124g00005 1080 Gene3D - 181 342 IPR027417 -
Vium3124g00005 1080 Gene3D Ribonuclease Inhibitor 525 786 IPR032675 -
Vium3124g00005 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 441 IPR027417 -
Vium3124g00005 1080 Pfam TIR domain 14 179 IPR000157 GO:0007165
Vium3124g00005 1080 ProSiteProfiles TIR domain profile. 12 180 IPR000157 GO:0007165
Vium3124g00005 1080 MobiDBLite consensus disorder prediction 1058 1080 - -
Vium3124g00005 1080 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 156 IPR035897 -
Vium3124g00005 1080 Pfam NB-ARC domain 199 428 IPR002182 GO:0043531
Vium3124g00005 1080 Gene3D Ribonuclease Inhibitor 795 902 IPR032675 -
Vium3124g00005 1080 FunFam Disease resistance protein (TIR-NBS-LRR class) 11 182 - -
Vium3124g00005 1080 SMART till_3 13 153 IPR000157 GO:0007165
Vium3124g00005 1080 MobiDBLite consensus disorder prediction 1066 1080 - -
Vium3124g00005 1080 SUPERFAMILY L domain-like 549 892 - -
Vium3124g00005 1080 Gene3D - 9 180 IPR035897 -
Vium3124g00005 1080 PRINTS Disease resistance protein signature 289 303 - -
Vium3124g00005 1080 PRINTS Disease resistance protein signature 215 230 - -
Vium3124g00005 1080 PRINTS Disease resistance protein signature 382 396 - -
Vium3124g00005 1080 PRINTS Disease resistance protein signature 672 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3124g00005 Vium-Chr3124 51038 54994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3124g00005 14 751 WRKY Transcription Factor Family AT4G12020 29.335 1.75e-75 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3124g00005 - - gmx:100784366 1604.73