Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium311g00001 ATGGCTGCGGTTGCTGAGATTCCCGCTGATGCCAACAAAATGGATTCAAAACCTAAGGCTGAATCTGAATTCAGTGTCCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCTTCGGCGAAGGAGTTTTTTCCTTCATCATATTCTCCCAATCATGATCATCGTCTTCAGGGCTTTAATCAGCTCTCACCAACCCACTTTCTGGTCAACTCTAAGCCTTCTGCTAATGAGAATTTCGCAAACAATCGAAGGAGAAGAAATAGTTTTAACCAAGGAAGAAGGAGGGTGAGTGGAAGATCACTAAAGGCTCAAAGAGAAGATAGCATTAGAAGAACAGTTTATGTTTCTGATATTGATCAGCATGTTACTGAGGAGAGGCTTGCAGCATTATTCAGCAGTTGTGGACAAGTAATTGATTGCCGAATTTGCGGTGACCCACATTCAGTTCTTCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTATGGTGCTAGAACAGCTTTAAACCTTGGTGGTACTGTACTTGGATACTATCCAGTGAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCTGTGAATCCTACATTCCTCCCTAGGTCAGATGATGAACGCGAAATGTGTGCCCGAACTGTCTATTGTACAAATATTGATAAGAAGGTTTCACAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGTGAGGTTACGCGCCTGAGGCTTTTGGGGGATCATGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCTGAAAGTGCCATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGAACTCAGCCTATAAGGGTAAGTCCTTCAAAGACTCCTGTGAGGCCAAGGGTCACTCGTCCGGCATCCCATTAA 891 0.431 MAAVAEIPADANKMDSKPKAESEFSVQKLVDMFTKLNPSAKEFFPSSYSPNHDHRLQGFNQLSPTHFLVNSKPSANENFANNRRRRNSFNQGRRRVSGRSLKAQREDSIRRTVYVSDIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTVYCTNIDKKVSQAEVKNFFESACGEVTRLRLLGDHVHSTRIAFVEFAMAESAIIALNCSGMLLGTQPIRVSPSKTPVRPRVTRPASH 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium311g00001 296 CDD RRM1_CID8_like 109 188 IPR034823 -
Vium311g00001 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 186 IPR000504 GO:0003723
Vium311g00001 296 Gene3D - 196 290 IPR012677 -
Vium311g00001 296 Gene3D - 69 187 IPR012677 -
Vium311g00001 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 277 IPR000504 GO:0003723
Vium311g00001 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Vium311g00001 296 Pfam Ataxin-2 C-terminal region 32 47 IPR009818 -
Vium311g00001 296 SUPERFAMILY RNA-binding domain, RBD 71 184 IPR035979 GO:0003676
Vium311g00001 296 CDD RRM2_CID8_like 204 285 IPR034825 -
Vium311g00001 296 FunFam Polyadenylate-binding protein-interacting protein 10 202 280 - -
Vium311g00001 296 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 32 290 - -
Vium311g00001 296 MobiDBLite consensus disorder prediction 1 21 - -
Vium311g00001 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 284 IPR000504 GO:0003723
Vium311g00001 296 SMART rrm1_1 209 280 IPR000504 GO:0003723
Vium311g00001 296 SMART rrm1_1 112 182 IPR000504 GO:0003723
Vium311g00001 296 MobiDBLite consensus disorder prediction 73 102 - -
Vium311g00001 296 FunFam Polyadenylate-binding protein-interacting protein 11 75 188 - -
Vium311g00001 296 SUPERFAMILY RNA-binding domain, RBD 198 290 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium311g00001 Vium-Chr311 11822 18365 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium311g00001 108 265 Eukaryotic Initiation Factors Gene Family AT1G34140 27.329 1.80e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium311g00001 - - gmx:100818291 552.747