Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3119g00003 ATGAGTTGCAACGGTTGCCGCGTCCTTCGAAAGGGTTGCAGCGAGTCTTGTATCCTGCGGCCGTGTCTACAGTGGATCGATACTCCCGAGGCCCAAGGTCATGCCACTGTCTTTGTTGCCAAATTCTTCGGTCGTGCTGACCTCATGTCTTTCATTTCCAACGTCCCTGAGGCCCAAAGGCCCGCTCTGTTTCAGTCTCTGCTGTTTGAAGCTTGCGGACGAACGGTGAATCCCGTCAACGGTGCCGTTGGCCTTTTATGGACTGGAAACTGGCACGTGTGTCAGGCGGCGGTTGAGACGGTGCTGCGTGGCGGTACTGTCAGGCCGGTGCCGGAGCTTCTTGGCCTTGACGCTCCCACTCCTGACGACGCCTCCGAAGGTGAAGTTACCTGTAACGACAAATGGAGGGTCCGAGATCCGAACCCGAGTTTCCGGTTGCCTGGTTCGATGTCCGATAAGGCTGCTTCTGGTGGTAAACGCAAGCGATTGGAAGAGCTTGCAAAGCTGCAGACGGCCACCACTGATCTCAATCTCCGTTTGACACCGAGTTTCCTGCAGAACGCGGCGAGCTTCGGTTGCCGACAGGAAATTCGATGGCCGAGATCGCCGTCGATCAACTCGGAGGAGTCCGGGACCACTACGGCGGCTTGCTTGGAAGGCGGGATCGGAGATCACTACGCTCCCGACGGAGGCCGGAAAGTGTTAAACCTCTTCATTTGA 720 0.5708 MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPEAQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTVRPVPELLGLDAPTPDDASEGEVTCNDKWRVRDPNPSFRLPGSMSDKAASGGKRKRLEELAKLQTATTDLNLRLTPSFLQNAASFGCRQEIRWPRSPSINSEESGTTTAACLEGGIGDHYAPDGGRKVLNLFI 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3119g00003 239 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Vium3119g00003 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 207 - -
Vium3119g00003 239 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3119g00003 Vium-Chr3119 63307 64877 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3119g00003 1 238 AS2 family AT3G49940 54.615 3.00e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium3119g00003 LOB 3.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3119g00003 - - gmx:100802764 459.529