Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3119g00001 ATGGATGAAGAGTTAAAACCTATGCTGTCTGTGAGAGAGTTCGATCCTGATCGAGATAGAGAGAGAGTAGAAGCTGTTGAAAGGATATGCGAAGTTGGACCCAGTGGCAAGCTTTCTCTCTTCACGGACATGCTCGGTGACCCAATTTGCAGGGTTCGCCATTCGCCTGCTTTTCTCATGCTGGTGGCGGAGATTGGTGAAGAGGTAGTAGGAATGATAAGAGGATGCATAAAAACGGTGACATGCGGAAAAAGACTATCCAGGAACGGAAAACACAATGCCAATAACACTAAGCATGTTCCGGTGTACACTAAAGTCGCCTACATACTAGGCCTTCGCGTTTCGCCCAATCAACGGAGAATGGGAATAGGGTTGAAGCTGGTGCACAGGATGGAGGCGTGGTTCAGGGATAATGGTGCCGAGTATTCCTACATGGCAACGGAAAACGACAATTTAGCTTCCGTTAAACTCTTCACCGACAAATGCGGGTATTCAAAGTTCCGTACCCCGTCCATTCTTGTCAACCCCGTTTTCGCCCACAGAGCAAGGGTGTCCCCCAAGGTCACAATCATTAGCCTTTCCCCTTCCGACGCGGAGGTTCTCTACCGTCGCCGTTTCGCCACGACGGAGTTCTTCCCGCGCGACATTGACTCCGTCCTGAAGAACAAGCTGAGTCTGGGGACGTTTCTGGCGGTCCCGGGCGGGTCCTACAGTGCCGAGACATGGCCTGGGCCAGATCTTTTCCTGTCGGACCCACCCAAGTCGTGGGCCTTGGTGAGCGTGTGGAACTCTAAGGAGGTGTTCACGCTCGAGGTGCGAGGCGCGTCGCGCGTGAAGCGCACGCTCGCGAAGACGACGAGGGTGGTGGACCGGGCCCTGCCGTGGCTGCGGGTACCGTCGATCCCAGACTTGTTCAGGCCATTCGGGTTTCACTTCATGTACGGGCTTGGAGGTGAAGGCCCAGATGCAGCGAAGATGGTGAAGGCCCTCTGTGGGTTCGCTCACAACCTCGCGATGGAAAAAGGTTGCAGGGTGGTGGCCACGGAAGTATCACCAAACGAGCCCTTACGGTCCGGTATACCCCACTGGAAGATGCTGTCTTGTGACGAAGATTTATGGTGTATGAAGCGGTTGGGTGAAGATTACAGTGACGGTTCCGTTGGTGACTGGACCAAATCTCAACCCGGAATGTCCATTTTTGTTGACCCGAGAGAGGTCTAA 1221 0.5389 MDEELKPMLSVREFDPDRDRERVEAVERICEVGPSGKLSLFTDMLGDPICRVRHSPAFLMLVAEIGEEVVGMIRGCIKTVTCGKRLSRNGKHNANNTKHVPVYTKVAYILGLRVSPNQRRMGIGLKLVHRMEAWFRDNGAEYSYMATENDNLASVKLFTDKCGYSKFRTPSILVNPVFAHRARVSPKVTIISLSPSDAEVLYRRRFATTEFFPRDIDSVLKNKLSLGTFLAVPGGSYSAETWPGPDLFLSDPPKSWALVSVWNSKEVFTLEVRGASRVKRTLAKTTRVVDRALPWLRVPSIPDLFRPFGFHFMYGLGGEGPDAAKMVKALCGFAHNLAMEKGCRVVATEVSPNEPLRSGIPHWKMLSCDEDLWCMKRLGEDYSDGSVGDWTKSQPGMSIFVDPREV 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3119g00001 406 CDD NAT_SF 60 142 - -
Vium3119g00001 406 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 7 166 IPR016181 -
Vium3119g00001 406 FunFam Probable N-acetyltransferase HLS1-like 18 171 - -
Vium3119g00001 406 Gene3D - 40 170 - -
Vium3119g00001 406 Pfam Acetyltransferase (GNAT) family 54 164 IPR000182 GO:0016747
Vium3119g00001 406 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 7 406 - -
Vium3119g00001 406 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 9 183 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3119g00001 Vium-Chr3119 7987 10028 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vium3119g00001 Acetyltransf_1 3.3e-17 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3119g00001 - - gmx:100800613 741.88