Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3118g00012 ATGTCTAGAACACTAGTGCAGCCTGTAGGGCAGAAGAGGCTAACAAATGTGGCAGTGGTGCGGCTGAAGAAGCATGGCATGCGCTTTGAAATTGCATGCTACCCTAACACTGTCCTCTCTTGGCGTTCTGGAGTGGAAAAAGATCTGGATGAAGTGCTGCAGTCCCATACTGTTTATTCTAATGTTTCCAAAGGGGTTCTCGCCAAGTCCAAGGATTTAATTGCAGCTTTTGGCACTGATGACCAGACCAATATATGCTTAGATATTTTAAAGAAAGGGGAGCTTCAGGTAGCTGGGAAAGAGAGGGAATCACTGTTGTCAAGTCAGTTCAGGGATATTGCAACCATCGTAATGCACAAGACATACAATACTGAGACTCAACGCCCTTATACTATCAGTATGATTGAACGCCTTATGCGGGAAATCCATTTTGCCGTTGATCCACACAGCGCCTCCAAGAAACAGGCTCTGGAGTTAATTCAAGAACTTCAAAAGCACTTCCCTATAAAACGATGTCCGTTGAGAATACGTGCTACTGCTCCTCAGGACCAATTGCCTAATCTTTTAGAAAAACTGAAGGAATGGAATGCTACTGTTATTTCTAAAGAAGGATCTTCTGCTCAGTTATCTGTTGTTTTTGAAATGGAACCTGGTCTATATAAGGATTGTCATGACTTTGTTATGAATAAGATGCATGGAAGATTTGAAGTTCTTGCTCACTCTCTTTATGTGGAGGGGGATACACATGTAGATCAATACAATGATTATGAGGATATGCCTGCACCTTTGCCCAAAGAAACTCATGATTCTGTGGTTGAATTGAATGAGAAACTTCAGAAACAAACAATTTCATCCACGAGTAGGCCTACTGAGGGACAACAAAAGCAAAACAAGTGCAATACATGTAATGTTTCTTTTGATGATTCTAAGCTATACAGGGAACATCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGTAAGACAAGGCAACTCCCACCACTTACTGAGGAAGAGTGCATGGCAGACATGGAATTAGGCGACTCAAAATCTGATTTGAAGGATTATTCATTTTGA 1077 0.416 MSRTLVQPVGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDLDEVLQSHTVYSNVSKGVLAKSKDLIAAFGTDDQTNICLDILKKGELQVAGKERESLLSSQFRDIATIVMHKTYNTETQRPYTISMIERLMREIHFAVDPHSASKKQALELIQELQKHFPIKRCPLRIRATAPQDQLPNLLEKLKEWNATVISKEGSSAQLSVVFEMEPGLYKDCHDFVMNKMHGRFEVLAHSLYVEGDTHVDQYNDYEDMPAPLPKETHDSVVELNEKLQKQTISSTSRPTEGQQKQNKCNTCNVSFDDSKLYREHHKSEWHKHNMKRKTRQLPPLTEEECMADMELGDSKSDLKDYSF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3118g00012 358 Gene3D - 1 96 IPR036786 -
Vium3118g00012 358 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Vium3118g00012 358 FunFam SBDS, ribosome maturation factor 100 172 - -
Vium3118g00012 358 ProSitePatterns Zinc finger C2H2 type domain signature. 299 321 IPR013087 -
Vium3118g00012 358 Gene3D Classic Zinc Finger 288 347 - -
Vium3118g00012 358 FunFam SBDS, ribosome maturation factor 3 96 - -
Vium3118g00012 358 Gene3D - 100 172 IPR037188 -
Vium3118g00012 358 Pfam SBDS protein, C-terminal domain 175 238 IPR046928 -
Vium3118g00012 358 NCBIfam ribosome assembly factor SBDS 13 232 IPR002140 GO:0042256
Vium3118g00012 358 MobiDBLite consensus disorder prediction 317 358 - -
Vium3118g00012 358 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Vium3118g00012 358 MobiDBLite consensus disorder prediction 343 358 - -
Vium3118g00012 358 Gene3D - 174 251 - -
Vium3118g00012 358 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 246 IPR039100 -
Vium3118g00012 358 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Vium3118g00012 358 SUPERFAMILY beta-beta-alpha zinc fingers 290 344 IPR036236 -
Vium3118g00012 358 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Vium3118g00012 358 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3118g00012 Vium-Chr3118 51289 57480 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3118g00012 27 358 C2H2 Transcription Factor Family AT1G43860 61.159 7.57e-148 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium3118g00012 SBDS_C 1.5e-26 CL0437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3118g00012 K14574 - gmx:100797497 679.478