Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3118g00008 ATGCATTTCGGTGAAAAAGGTCCCTTGTTTCTTGTTTGTGTTCTTGTTTTGTTGAAAGGCATTCGTGGTGCATGGAATGAGGAGCCAGGGTCTTTGATCTTGGGTTGCGGATTGGATGAAGGAGCTGAAGATGCTGACGGAAGAAGATGGAGTTCTGATAAAAAGTTCTTGGGGACAGAAGGTGATTCAATCACATCCAAAGCCTCTTTCCAAGACCCTTCTCTTACGTCTGAGATTCCATACATGTCAGCACGCATTATAAAATCTGAGACAACATACAAATTCCCCGTTAAACCTGACAAGCGTTATTGGCTCAGGCTCCATTTTTACCCCTCTATTTATGCCAGTTTTGATACCTATAACTCATATTTCTCCGTGGATGCAAATGGGGTTACCCTCCTCACCAATTTCAGCGCCTCAGTGACTTGTGAGGCCCTATCACTAGCTTACATTGATAGAGAGTATTCCCTTGCTCCTTTGAATTCAGATACCTTGACTCTCACTTTCAGGCCTTCTGATAAATACAACGGTGCATTCGCTTTTGTTAATGGCATTCAGCTTATCCAAATGCCCGATTTGTTTGATTCTGCAACAATGATAGGGTTTGATGGCCAAACCATAGATATGACAAACTTGAATTTTCAGACCATGTTTAGATTAAATGTTGGGGGGCAGTTCATATCTCCAGTCCAAGATTCTGGACTCACAAGGATGTGGTATGATGATACACCTTATATTTATGGGGCAGCCACTGGTGTGACGAACAAAGCAGAGAAGAATGTGACAATCAACTATCAGGGCATGCCAGAGTATATTGCTCCTGTTGATGTCTACTCCACATCTAGATCAATGGGGGGAGATAAAGATCTCACCATGGGCTACAATCTCACTTGGATGTTCCATGTTGATACTGATTCCATGTACCTTGTAAGGTTGCATTTCTGTGATTACTACTTCTCCAAGATCAATGAGATTGTGTTCAAAATCTTTGTGAACAACCAAACAGCACAAGATCTAGCCGATGTGATTGGGTGGACAGGAGGCGTAGGAGTGCCAACTTATAAGGACTACGTGATAAATGTTGAAGGTGGAAAGAGTAATGAGTTGCTGTGGCTCGCACTGCACCCCGACCCTGAGACAAAGCCTGAGTTCTACGATGCCATACTCAATGGAGTAGAGATATTCAAGATCAACGAGAAAGACTTATCTGCTCCCAATCCTCTGATTTCAGACATGCTCCTCAAACAGCACCAGGAGGAGGAAGCGGGTTTCTTCGTCCACAAAACAAGTCATCATTCTGTTATCGGTGGAGCTGCAGGAGGTGCTGCTGGTCTTGCTTTTATGGCTGTGTTATGTGTTGCTGTGTACAACAAGAAGAAGAAAGAACCAGGGTCAGAGGGTCAAACTGGCTGGCTTCCCATGTATTCGAACTCAAGCTGTAGCAAATCCAGCAAGTCTGGAAAGAGCGTGTGCAGTTCCACCTTATCTGCCATGTCTCAAGGTCTTTGCCGCTATTTCTCCTTGCAAGAGATAACGCAAGCAACCAAGAATTTTGATGAGTCTAACGTCATTGGGGTTGGTGGGTTTGGAAAGGTTTACAAGGGTGTCATTGATAATGGAGTGAAGGTGGCAATCAAGAGGTCCAACCCACAGTCAGAACAAGGAGTTAATGAATTCCAAACGGAAATTGAGATGCTTTCCAAGCTGAGACACAAGCATTTGGTGTCCTTGATTGGTTTCTGCGAGGAACATAATGAGATGTGCTTGGTTTATGACTACATGGCTCTTGGCACCATGAGGGAGCATCTTTACAAGGGCAACAAACCTATCTCTACTCTGTCATGGAAGCAAAGGTTGGAGATTTGCATTGGAGCTGCAAAAGGGCTTCACTACCTTCACACCGGGGCGAAGTACACCATCATTCACAGAGATGTCAAAACAACAAACATTCTCTTGGATGAAAACTGGAATGCCAAGGTTTCAGATTTTGGCTTGTCAAAAACTGGTCCAAATATGAACAATGGTCATGTTAGCACTGTGGTGAAGGGTAGTTTTGGCTACTTGGACCCTGAATACTTCAGGAGGCAACAGTTGACTGAAAAATCTGATGTTTACTCATTTGGGGTTGTTCTGTTTGAAGCCCTGTGTGCCAGGCCTGTTCTCAATCCTAACCTTCCAAAGGAACAGGTTAGTCTTGCTGAATGGGCATTGATTTGCAAGAAAAAAGGAACTCTGGAGGATATCATTGATCCTAGTATCAAGGGAAAAATCAATCCAGAAAGCTTGAAGAAGTTTGTAGACACGGCTGAGAAGTGTTTGTCCGATCATGGAGCTGCTCGTCCCTCCATGAATGATCTATTGTGGAATCTTGAATTTGCTCTCAATTTGCAAGAAAATGTCAATGATGCGGGTGGTTCAACTCATTCTGCCCCTGCTGAGAAAAGTGAGTTCGAAGATATAATCTTGAGAGAAAACGACATAGCACGCCACTATAGAAACCTGAGCCTTGGAAGTGATATTGACATTACCAACGATTTGAAAGACAATGAGCAAGACTTCTCACAACTTGTCAGTCCACAAGGCCGATGA 2589 0.4368 MHFGEKGPLFLVCVLVLLKGIRGAWNEEPGSLILGCGLDEGAEDADGRRWSSDKKFLGTEGDSITSKASFQDPSLTSEIPYMSARIIKSETTYKFPVKPDKRYWLRLHFYPSIYASFDTYNSYFSVDANGVTLLTNFSASVTCEALSLAYIDREYSLAPLNSDTLTLTFRPSDKYNGAFAFVNGIQLIQMPDLFDSATMIGFDGQTIDMTNLNFQTMFRLNVGGQFISPVQDSGLTRMWYDDTPYIYGAATGVTNKAEKNVTINYQGMPEYIAPVDVYSTSRSMGGDKDLTMGYNLTWMFHVDTDSMYLVRLHFCDYYFSKINEIVFKIFVNNQTAQDLADVIGWTGGVGVPTYKDYVINVEGGKSNELLWLALHPDPETKPEFYDAILNGVEIFKINEKDLSAPNPLISDMLLKQHQEEEAGFFVHKTSHHSVIGGAAGGAAGLAFMAVLCVAVYNKKKKEPGSEGQTGWLPMYSNSSCSKSSKSGKSVCSSTLSAMSQGLCRYFSLQEITQATKNFDESNVIGVGGFGKVYKGVIDNGVKVAIKRSNPQSEQGVNEFQTEIEMLSKLRHKHLVSLIGFCEEHNEMCLVYDYMALGTMREHLYKGNKPISTLSWKQRLEICIGAAKGLHYLHTGAKYTIIHRDVKTTNILLDENWNAKVSDFGLSKTGPNMNNGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCARPVLNPNLPKEQVSLAEWALICKKKGTLEDIIDPSIKGKINPESLKKFVDTAEKCLSDHGAARPSMNDLLWNLEFALNLQENVNDAGGSTHSAPAEKSEFEDIILRENDIARHYRNLSLGSDIDITNDLKDNEQDFSQLVSPQGR 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3118g00008 862 SUPERFAMILY Protein kinase-like (PK-like) 492 793 IPR011009 -
Vium3118g00008 862 Pfam Malectin-like domain 35 397 IPR024788 -
Vium3118g00008 862 ProSiteProfiles Protein kinase domain profile. 518 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3118g00008 862 FunFam Receptor-like protein kinase FERONIA 594 807 - -
Vium3118g00008 862 Gene3D Transferase(Phosphotransferase) domain 1 594 809 - -
Vium3118g00008 862 Gene3D Phosphorylase Kinase; domain 1 477 593 - -
Vium3118g00008 862 SMART serkin_6 518 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3118g00008 862 CDD STKc_IRAK 524 791 - -
Vium3118g00008 862 ProSitePatterns Protein kinases ATP-binding region signature. 524 546 IPR017441 GO:0005524
Vium3118g00008 862 Gene3D - 212 398 - -
Vium3118g00008 862 Gene3D - 33 191 - -
Vium3118g00008 862 FunFam receptor-like protein kinase FERONIA 480 593 - -
Vium3118g00008 862 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Vium3118g00008 862 PANTHER OS07G0166700 PROTEIN 502 797 IPR045272 GO:0004714|GO:0006468
Vium3118g00008 862 FunFam FERONIA receptor-like kinase 212 398 - -
Vium3118g00008 862 FunFam FERONIA receptor-like kinase 31 191 - -
Vium3118g00008 862 Pfam Protein tyrosine and serine/threonine kinase 522 787 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3118g00008 Vium-Chr3118 37645 41018 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3118g00008 32 862 Receptor kinase-like Gene Family AT3G51550 53.280 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium3118g00008 Malectin_like 2.6e-32 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3118g00008 - - gmx:102659961 1373.22