Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3117g00002 ATGAAGAAGAAAGGTCGAGGAATGTCCATATTTGTCTCTATACTAGATGGTGATTACCATGAACGTGCTGAAGATGCCAAAACTGCTTGTAAACAACTTAGCACCTACATTGATTACAAAAATTGTGAAGGTGTGGCTGAGATTGTTGTAGCCCCCAACATGTCTGAAGGCTTCCGTGGAATTATTCAGACAATGGGCCTGGGCAATCTCAAGCCAAACATAGTGGTGATGCGTTACCCAGAAATTTGGCGAAGGGAAAACTTGACAGAAATCCCTGCCACCTTCGTTGGGATAATCAATGATTGCATTGTTGCAAACAAAGCTGTGGTTATAGTTAAGGGTCTTGATGAATGGCCGAATGAGTACCAGAGGCAGTATGGTACGATTGATTTGTACTGGATTGTAAGAGATGGTGGTCTCATGCTGCTTCTCTCTCAGCTCCTTCTTACCAAGGCGAGCTTTGAGAATTGCAAGATTCAGGTCTTCTGTATCGCAGAAGACGATGGAGATGCAGAGGGACTGAAAGCTGATGTGAAAAAATTCCTTTATGATCTTCGGATGCAAGCGGAAGTTTTTGTCATAACAATGAAATGGGATGCACAGATGGATGGGGGTGGTGGGTCTCCACAAGACGAGTCGTCGGAAGCATTTACTAGTGCTCAGCAGAGAATTGATGATTACTTAACCCAGATGAAGGTAAGAGCACAGAAAGAAGGTACTCCTCTAAGGGCAGAAGGTAAGCCTGTGGTTGTGAACGAGAAGCAGGTGGAGAAGTTTCTTTACACAACACTAAAGCTCAATTCAATAATTCTGAGATATTCAAGAATGGCTGCTGTTGTATTGGTAAGTCTTCCTCCACCTCCACTGAGTCACCCAGCATACTTCTATATGGAGTACATGGATCTGTTGCTGGAGAATGTACCAAGGATTTTGATTGTAAGAGGTTATCGTAGAGACGTTGTAACTCTATTCACGTAG 978 0.4335 MKKKGRGMSIFVSILDGDYHERAEDAKTACKQLSTYIDYKNCEGVAEIVVAPNMSEGFRGIIQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKASFENCKIQVFCIAEDDGDAEGLKADVKKFLYDLRMQAEVFVITMKWDAQMDGGGGSPQDESSEAFTSAQQRIDDYLTQMKVRAQKEGTPLRAEGKPVVVNEKQVEKFLYTTLKLNSIILRYSRMAAVVLVSLPPPPLSHPAYFYMEYMDLLLENVPRILIVRGYRRDVVTLFT 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3117g00002 325 PANTHER SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS 3 322 IPR004842 GO:0006811|GO:0015377|GO:0016020
Vium3117g00002 325 Pfam Solute carrier family 12 4 113 IPR018491 GO:0006811|GO:0016020|GO:0022857
Vium3117g00002 325 Pfam Solute carrier family 12 124 324 IPR018491 GO:0006811|GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3117g00002 Vium-Chr3117 6484 8007 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3117g00002 1 325 Inorganic Solute Cotransporters AT1G30450 81.902 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3117g00002 K14427 - vum:124833250 624.394