Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3117g00001 ATGTTCCTAATCTCTTGGTCATTCACTGTGGTATCTTTGGCCCTTGCAAGCCTCATATATAAGTACGTGAGCATTAAAGGAAAGGCTGGGGACTGGGGTGATGGTTTCAAAAGTGCCTATTTCCAACTAGCACTTCGTAGCCTTCGGTCTCTTGGAGCAAGCCAAGTGCACCCAAAAAATTGGTATCCAATTCCACTAATATTTTGCCGACCCTGGGGCAAACTGCCAGAAAACGTTCCATGTCATCCCAAACTTGCAGATTTTGCGAACTGCATGAAGAAGAAAGGTCGAGGAATGTCCATATTTGTCTCTATACTAGATGGTGATTACCATGAACGTGCTGAAGATGCCAAAACTGCTTGTAAACAACTTAGCACCTACATTGATTACAAAAATTGTGAAGGTGTGGCTGAGATTGTTGTAGCCCCCAACATGTCTGAAGGCTTCCGTGGTATTATTCAGACAATGGGCCTGGGCAATCTCAAGCCAAACATTGTGGTGATGCGTTACCCAGAAATTTGGCGAAGGGAAAACTTGACAGAAATCCCTGCCACCTTCGTTGGGATAATCAATGATTGCATTGTTGCAAACAAAGCTGTGGTTATAGTTAAGGGTCTTGATGAATGGCCGAATGAGTACCAGAGGCAGTATGGTACGATTGATTTGTACTGGATTGTAAGAGATGGTGGTCTCATGCTGCTTCTCTCTCAGCTCCTTCTTACCAAGGCGAGCTTTGAGAATTGCAAGATTCAGGTCTTCTGTATCGCAGAAGACGATGGAGATGCAGAGGGACTGAAAGCTGATGTGAAAAAATTCCTTTATGATCTTCGGATGCAAGCGGAAGTTTTTGTCATAACAATGAAATGGGATGCACAGATGGATGGGGGTGGTGGGTCTCCACAAGACGAGTCGTCGGAAGCATTTACTAGTGCTCAGCAGAGAATTGATGATTACTTAACCCAGATGAAGGTAAGAGCACAGAAAGAAGGTACTCCTCTAAGGGCAGATGGTAAGCCTGTGGTTGTGAACGAGAAGCAGGTGGAGAAGTTTCTTTACACAACACTAAAGCTCAATTCAATAATTCTGAGATATTCAAGAATGGCTGCTGTTGTATTGGTAAGTCTTCCTCCACCTCCACTGAGTCACCCAGCATACTTCTATATGGAGTACATGGATCTGTTGCTGGAGAATGTACCAAGGATTTTGATTGTAAGAGGTTATCGTAGAGACGTTGTAACTCTATTCACGTAG 1251 0.4388 MFLISWSFTVVSLALASLIYKYVSIKGKAGDWGDGFKSAYFQLALRSLRSLGASQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHERAEDAKTACKQLSTYIDYKNCEGVAEIVVAPNMSEGFRGIIQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKASFENCKIQVFCIAEDDGDAEGLKADVKKFLYDLRMQAEVFVITMKWDAQMDGGGGSPQDESSEAFTSAQQRIDDYLTQMKVRAQKEGTPLRADGKPVVVNEKQVEKFLYTTLKLNSIILRYSRMAAVVLVSLPPPPLSHPAYFYMEYMDLLLENVPRILIVRGYRRDVVTLFT 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3117g00001 416 PANTHER SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS 1 413 IPR004842 GO:0006811|GO:0015377|GO:0016020
Vium3117g00001 416 Pfam Solute carrier family 12 215 415 IPR018491 GO:0006811|GO:0016020|GO:0022857
Vium3117g00001 416 Pfam Solute carrier family 12 83 204 IPR018491 GO:0006811|GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3117g00001 Vium-Chr3117 2347 5112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3117g00001 1 416 Inorganic Solute Cotransporters AT1G30450 84.173 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3117g00001 K14427 - vum:124833249 811.216