Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3112g00002 ATGGAAAACCACCAAAACCACAAGGGAGAGGCAGAACCTGATAGAGAGAACAACCAAAACCAAAACAATAACCAGGCGTGGGGCACGTGGGAGGAGTTGTTGCTAGCGTTCGCTGTGAACCGCCATGGCTTCAAGGACTGGGACACCGTCGCCATGGAGGTTCAGTCGCGCGCCACGCGCCTCCTCGCCACGGCGCGCCACTGCGAGCAGAAATTTCACGATCTCAGCCGCCGATTCGCCGACCAATGCAACGACGGTGTTACGCCGCCGCAACATGACGGCGAAGCCACCGGGGACAACTCCGATCACGTCCCTTGGCTGGACGAATTGCGTAAACTCCGTGTTGACGAGCTCCGCCGCGAGGTCCAGCGGCGCGACGATTCCATTATGTCGCTGCAGTTGGAGGTGAAGAGGCTGGAGGAGGAGAAAGCGAAAGAGAATGACGGTAAAGACGGCGAGAAACCAGATCTGGCGGTTCCCGGCGAAGTGCGGCCGGAAAACGACAAAACCGGCGGAGAAGTTGAAGAGGTTGGACCGGCGAATTCCGGACCGGAGAGAACCGCAAACGCTGACAAGATGTTGCCAACAACGGGCGACGAATCCGACCGGGAGAATCAATCAGTTAACGAGTCTAACTCGACCGGTTCGAGGTTTGATAAAACCGGAGAAGGTGATGCAAAGTTAAAAGTCGAACCGGATCCGGTTCAGACCGGTTCAAAAGAAGTGGACCCGGTTGCGAGGAAGGGAAAACCGGTTGGGGAGGAATCGAATAATGGAAGCTACGATGCCTTGGCGAAGGTGCCAACGTGTGAGTCGGTGCCTCCGAGTGACGAGAGGAAGGTGGAGCAGGATGATGACTCGTCTGAGTTGCACGACTCGGTGGCTCACTCCGGGGAGGGAGGGACGAGGGAGAGCAGCGAAGTGCAGAGCTCGGCCAGCTTGACGCGAAAGAGGAAGACGCGACGTAGAAAAGATGTTTCCGGCGGCGACGGTCGCGGAGACGGCGCTTCTACACTGCCGGAGAACGAAGAGGTAGCGGTTAAATCAGAACCGTTGGTTGGTATTTTGGAGTTGATCAAGGGACATGAGCATTGTTCATTAATCGAGAGTCGTCTTGAGAGCCAGCTGGAGTCGGACAGATACAAAGACATAGTGAAACAGCCACTGGACATGGAAACCATACAATCAAGAATCCAGAAAGGTCAGTATTTCTCATGCACTAGTGCATTCTTCCGCGACCTCCTCCTCCTGTTCACCAACGCTACCGTCATCTTCCCCGTTGACTCTCCAGAGTCACAGGCGGCAAGGCAGCTGCACCGCCTTGTCACCACCGAGATGAAGAACCACGGCCAAGCACAATCCGACCCTATCCCCCGGAAGAGCGATTCACTCCCTCCAAACATACCAGTAGCCAAAGCAGATTCTCTCTTGTCCAAGAACAAAGCCTCTGGTCCCATATTGGTTTGCCGCAAACGCAGTTCAATGTCAGCGAAACCTTCCTCGACCAATTTTGGCCAAAAGAATGACCAACCCATCTTCAACGACAAGAAGGAAAGGGCACCTTCTGATTCAAAACCTCCTACGAAACCTTCTTCTTCTGATACAGACGAAGACGAGCCCCCCAAGGCCAAGGAGAAGCCTGTCACTGGAGCGAGAAGTCTGAGAAGGAGCAACAAGAACCTCAACAATAAGAAACTTCCCTCTAACTCCACTCCTAAGGCGGGGTCCTCGGGTAACAAGCCATCAGAGAGTCTTAAACCAGAGAAGAGCAAAGCAGAGGGAGGGGCAGACAAGAAGAGGAGTGCTGCTGCAGATTTCTTGAAACGGATAAAGCGAAATACTTCAGTGGACGCAGTGAAAGGTGGTGGTGCCGGAGGAGGAGGAAGTAGTAGCAGCAGCAAGGGAGGTGGAGGTGGTGTTGGTGCCAAAGAGCAGAAGAAAATGGTGAATAATGTAAAAGGGGATAAAGGGAAAGAAAGGGCATCAAGGCATGGCGTTGGAGGGGGATCAGGGTCTGCGGATAAAAGGAATAAGAACATCGAGAACAGCTCTCAGTCGAAGAGGAGTGTTGGTAGACCTCCAAAGAAGGCAGCAGAGACAAATGCAGGAAGTTCAAAGCGTGGGAGGGAAAATAGTGCTAGTGCTGGCAAAGATAAGCGACCCAAGAAACGTTCCAAGAAATGA 2184 0.5348 MENHQNHKGEAEPDRENNQNQNNNQAWGTWEELLLAFAVNRHGFKDWDTVAMEVQSRATRLLATARHCEQKFHDLSRRFADQCNDGVTPPQHDGEATGDNSDHVPWLDELRKLRVDELRREVQRRDDSIMSLQLEVKRLEEEKAKENDGKDGEKPDLAVPGEVRPENDKTGGEVEEVGPANSGPERTANADKMLPTTGDESDRENQSVNESNSTGSRFDKTGEGDAKLKVEPDPVQTGSKEVDPVARKGKPVGEESNNGSYDALAKVPTCESVPPSDERKVEQDDDSSELHDSVAHSGEGGTRESSEVQSSASLTRKRKTRRRKDVSGGDGRGDGASTLPENEEVAVKSEPLVGILELIKGHEHCSLIESRLESQLESDRYKDIVKQPLDMETIQSRIQKGQYFSCTSAFFRDLLLLFTNATVIFPVDSPESQAARQLHRLVTTEMKNHGQAQSDPIPRKSDSLPPNIPVAKADSLLSKNKASGPILVCRKRSSMSAKPSSTNFGQKNDQPIFNDKKERAPSDSKPPTKPSSSDTDEDEPPKAKEKPVTGARSLRRSNKNLNNKKLPSNSTPKAGSSGNKPSESLKPEKSKAEGGADKKRSAAADFLKRIKRNTSVDAVKGGGAGGGGSSSSSKGGGGGVGAKEQKKMVNNVKGDKGKERASRHGVGGGSGSADKRNKNIENSSQSKRSVGRPPKKAAETNAGSSKRGRENSASAGKDKRPKKRSKK 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3112g00002 727 Pfam Myb-like DNA-binding domain 25 74 IPR001005 -
Vium3112g00002 727 MobiDBLite consensus disorder prediction 299 313 - -
Vium3112g00002 727 MobiDBLite consensus disorder prediction 1 15 - -
Vium3112g00002 727 MobiDBLite consensus disorder prediction 83 103 - -
Vium3112g00002 727 Coils Coil 115 149 - -
Vium3112g00002 727 MobiDBLite consensus disorder prediction 511 552 - -
Vium3112g00002 727 MobiDBLite consensus disorder prediction 140 173 - -
Vium3112g00002 727 MobiDBLite consensus disorder prediction 140 345 - -
Vium3112g00002 727 MobiDBLite consensus disorder prediction 220 236 - -
Vium3112g00002 727 MobiDBLite consensus disorder prediction 648 663 - -
Vium3112g00002 727 SMART bromo_6 125 451 IPR001487 GO:0005515
Vium3112g00002 727 MobiDBLite consensus disorder prediction 1 23 - -
Vium3112g00002 727 MobiDBLite consensus disorder prediction 446 460 - -
Vium3112g00002 727 MobiDBLite consensus disorder prediction 584 615 - -
Vium3112g00002 727 MobiDBLite consensus disorder prediction 675 690 - -
Vium3112g00002 727 CDD Bromodomain 381 446 - -
Vium3112g00002 727 Pfam Bromodomain 377 436 IPR001487 GO:0005515
Vium3112g00002 727 SUPERFAMILY Bromodomain 353 453 IPR036427 GO:0005515
Vium3112g00002 727 CDD SANT 26 75 IPR001005 -
Vium3112g00002 727 MobiDBLite consensus disorder prediction 553 583 - -
Vium3112g00002 727 MobiDBLite consensus disorder prediction 446 727 - -
Vium3112g00002 727 MobiDBLite consensus disorder prediction 494 510 - -
Vium3112g00002 727 MobiDBLite consensus disorder prediction 273 298 - -
Vium3112g00002 727 ProSiteProfiles Bromodomain profile. 360 421 IPR001487 GO:0005515
Vium3112g00002 727 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 15 727 - -
Vium3112g00002 727 Gene3D - 341 460 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3112g00002 Vium-Chr3112 4383 9100 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium3112g00002 Bromodomain 6.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3112g00002 - - gmx:100811021 1033.09