Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium310g00010 ATGGAGGAAGAAGAACCTTCCATAACATCACCACCTCCAGGAAGGTTACACAAGTTCCTCTTCCGCGGTGGCAAGCCTGTCATCGCCGCGAAGCCTCTCACTGTGGTCCGCTCCACCACCAGCAACGGCGGCGCGCGCGTTCTTGCCTCGCAGCCAAACCCTAACGAGAACAATGCTCTCCAGGAAGAAGGACAAGGCGAAACCGGCTTCGATGTTTCTTATTTCAAGGCACTGAACAAAAGGCAACAACAACAACAGCAAAGGCTCGAGGAGTTTCTAAAGGGCACGAACACGAAGGTCGCTTCCAAAGGAGAGTCTTTGAAATCGATGGCGCCATTGGAAGAAGAAGTAGAAGAAGAGGAGGAGGAAGGCGATGAGGCAGAATCAACTCCACCGGTTCAACCGGTTAGGATAGTGTCGGAACCGGTTCCACCGGTGCAGACAACAGAGATTAGTGATGATGTGGAGGTGGTGGCGGTGCGCAAGGATGTGGAGAAGAGGAATATTCCTAATCTCGAGGACGGGGAGTTTCCGGAGGAGGCTGGATGGTTCTTGCTTGGGAGGAAGGCTGAGGTTGCGGTTTCGACTGCCAGAGGAGTGCGCAGATTGGTGGACAATGAAATCGTTCATTTCAACTTTCCTCTGCCGACTTACTCGAGAAAGTCTCAGTTGATCGTTCGTGTTTCAACCAAGCGTTCTGGAGAGGTTGGGAGGATGCCAATGGAGTGGGCAAAGATTGTGATTCCACTTATGCGCTCTGGAAAGATCAAGGTTCGAGGCCGATGCATTGCTGCCCCAGATAAACTGGAGATGATGCAAGAGATTCTGTTTTTAGTGAGCTTTTATATTCACAATTCTGTGTTTGCCGACCGTGTTGACACCTCTTGGAGGCTAGAGGCTTGTGGTAAAATTGATGATACTATGTACCCAATTCTTGCCCTATTAAAAATGCTAGAGATCAAGCCATCTCGAAAGGCTGAATTCATGCCAGAAGATATAGATTCTCGAAAGCGGTTGCTCTATCCAAGGGCTGGGTCAGATGAAGCTTCAGCATTGCATTTGATCAAGCGAAGAAAGGGTAGCGAGCCTATTCCCGAGCAAAATAATGACGAACAAGCCCTTTCAGAGTCAGCTTTAAACAAAATTGTTGGAGCTGCAGAAATCTATGACTTAAAGGAGAAGGAAGCCCCAAAGACACTTATGTGTAATCTAAAGCCTTACCAGAAGCAGGCCCTGTATTGGATGGATGAAATCGAGAAGGGAATGGATGTTGAGAGTGCAGAAAGAACTCTGCATCCCTGCTGGTCAGCCTACACTATATGCAAGGGAAGGACTATTTATGTCAATACATTTACCGGAGAAGCTTCAAAGAAATTTCCCAAAACAACTGAGATGGCAAGAGGAGGAATTCTAGCGGATGCAATGGGACTTGGAAAGACCGTTATGACAATTGCTCTGATACTCAGTAATCCAGGCCGAGGCAACTCAGAAAACAAGGATGCAATAAATGGACACGATGATATTATAGCAAATAAAAGGAAGAACGCTTACGCGATGCATAAAGTCGAGGGTGGCACTCTAATTGTTTGTCCCATGGCTTTGTTAGGTCAATGGAAGGATGAGCTTGAAACGCATTCAAAGCGCGGTAGTATATCCATATTTGTTCATTATGGTGGCAGAAGAACCGATGATCTCTTGTTCATCTCTGGGCATGACGTTGTCTTAACAACTTATGGTGTCCTATCAGCTGAATACAAAAATAATGGAGGCAATAGCATCTACCACAAGATCCAATGGTACAGGGTGGTGCTGGACGAAGCTCATAATATAAAAGCCCATAGAAGTCAGGTTTCCCAGGCTGCTTTTACTCTCTCAGCACACAGCCGCTGGTGTCTAACTGGAACACCGCTTCAGAATAGCTTGGAGGACCTATACAGTCTCTTGTGTTTCTTGCGTGTTGAACCTTGGTGCAACTGGGCATGGTGGCAAAAGTTGATTCAAAGGCCTTATGAGAATGGTGATCCAAGATCCTTGAAGCTGGTCAAAGCCATTTTGAGGATGCTAATACTAAGAAGAACGAAGGAATCGAAAGATAAAGAGGGAAGGCCTATACTTCTTCTGCCTCCAATTGACATTGAATTGATTGAATGTAAACAATCAGAGTGTGAACGTGACTTCTACGAAACCCTTTTCGAGCGATCTAAAGTTCAATTTGATCAGTACGTTGCACAAGGAAATGTTCTACACCATTATGCCAATATCCTTGACCTTCTAATGCAGTTGAGACGCTGTTGTAACCATCCGTTTTTGGTTATGTGCGGAAGCGATTCCCGTAAGTATGCAGACTTAGGCAGAATCGCAAGAAGATTTCTTCAGTCTGATACTGGTTCACCCAACGAAAGCAATCAAGATGATCCACAGCTGAAAGCAGAGGTGAACAAACTCGCAAGTATATTACTTAATTCCGCTTCTCCGGACTCTATCCAACCTCGTGCATACATTGAAGAGGTTTTGGAGAATATTCAAAAGGGCGATCCTGGAGAATGCGCAGTATGTTTGGAATCTCCAGAAGATCCTGTGTTTACTCCATGTGCTCATAAATTTTGTAGAGAATGTCTGTTCAGTTGCTGGGGCACCCCAGCGGGTGGCCAATGTCCAATGTGTCGTAATTTGCTCCAGAAAGATGATCTGATCACTTGTCCGTCTGAAAGCCCATTCAAGGTCGATATTAAGAACAATGTGACAGAGTCTTCGAAGTTTTCAAAGCTATTCGAATTCCTGGAAGGTATTCTGAACTCACCCGCGGGTGAAAAGAGTATTGTCTTCAGTCAGTGGACTTCATTTTTTGATCTCTTGGAGAATCCATTGAGGCGGAGGGGCATTGGCTTTTTGAGATATGATGGAAAATTGACGCAGAAACAGAGGGAGAAAGTTCTGGATGAATTCAATAAAACAAGGGAGAAAAGGGTTTTGCTGATGTCGCTAAAGGCTGGTGGTGTAGGCTTGAACTTAACTGCAGCCTCAAATGTTTTCATAATGGATCCGTGGTGGAATCCTGCTCTTGAGGAGCAAGCCATAATGAGAATTCATCGCATAGGACAAAACCGTAGAGTTAAAGTAAGAAGATTCATTGTGAAGGACACAGTGGAAGATCGTTTGCAACAAGTGCATGCCAGGGAACAGAGGATGATATCTGGCACCCTCACCGATGATGAGGTTCGGTCTGCTCGGATCCAAGACCTCAAAATGCTATTCACGTGA 3261 0.4557 MEEEEPSITSPPPGRLHKFLFRGGKPVIAAKPLTVVRSTTSNGGARVLASQPNPNENNALQEEGQGETGFDVSYFKALNKRQQQQQQRLEEFLKGTNTKVASKGESLKSMAPLEEEVEEEEEEGDEAESTPPVQPVRIVSEPVPPVQTTEISDDVEVVAVRKDVEKRNIPNLEDGEFPEEAGWFLLGRKAEVAVSTARGVRRLVDNEIVHFNFPLPTYSRKSQLIVRVSTKRSGEVGRMPMEWAKIVIPLMRSGKIKVRGRCIAAPDKLEMMQEILFLVSFYIHNSVFADRVDTSWRLEACGKIDDTMYPILALLKMLEIKPSRKAEFMPEDIDSRKRLLYPRAGSDEASALHLIKRRKGSEPIPEQNNDEQALSESALNKIVGAAEIYDLKEKEAPKTLMCNLKPYQKQALYWMDEIEKGMDVESAERTLHPCWSAYTICKGRTIYVNTFTGEASKKFPKTTEMARGGILADAMGLGKTVMTIALILSNPGRGNSENKDAINGHDDIIANKRKNAYAMHKVEGGTLIVCPMALLGQWKDELETHSKRGSISIFVHYGGRRTDDLLFISGHDVVLTTYGVLSAEYKNNGGNSIYHKIQWYRVVLDEAHNIKAHRSQVSQAAFTLSAHSRWCLTGTPLQNSLEDLYSLLCFLRVEPWCNWAWWQKLIQRPYENGDPRSLKLVKAILRMLILRRTKESKDKEGRPILLLPPIDIELIECKQSECERDFYETLFERSKVQFDQYVAQGNVLHHYANILDLLMQLRRCCNHPFLVMCGSDSRKYADLGRIARRFLQSDTGSPNESNQDDPQLKAEVNKLASILLNSASPDSIQPRAYIEEVLENIQKGDPGECAVCLESPEDPVFTPCAHKFCRECLFSCWGTPAGGQCPMCRNLLQKDDLITCPSESPFKVDIKNNVTESSKFSKLFEFLEGILNSPAGEKSIVFSQWTSFFDLLENPLRRRGIGFLRYDGKLTQKQREKVLDEFNKTREKRVLLMSLKAGGVGLNLTAASNVFIMDPWWNPALEEQAIMRIHRIGQNRRVKVRRFIVKDTVEDRLQQVHAREQRMISGTLTDDEVRSARIQDLKMLFT 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium310g00010 1086 Pfam SNF2-related domain 407 770 IPR000330 GO:0005524|GO:0140658
Vium310g00010 1086 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 919 1086 IPR001650 -
Vium310g00010 1086 SMART ultradead3 400 671 IPR014001 -
Vium310g00010 1086 FunFam DNA repair protein RAD5B 457 693 - -
Vium310g00010 1086 MobiDBLite consensus disorder prediction 41 64 - -
Vium310g00010 1086 MobiDBLite consensus disorder prediction 100 137 - -
Vium310g00010 1086 Pfam Helicase conserved C-terminal domain 926 1033 IPR001650 -
Vium310g00010 1086 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 460 654 IPR014001 -
Vium310g00010 1086 SUPERFAMILY RING/U-box 834 894 - -
Vium310g00010 1086 CDD DEXDc_SHPRH-like 404 692 - -
Vium310g00010 1086 SMART HIRAN_2 186 283 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vium310g00010 1086 ProSitePatterns Zinc finger RING-type signature. 864 873 IPR017907 -
Vium310g00010 1086 Pfam Zinc finger, C3HC4 type (RING finger) 849 888 IPR018957 GO:0046872
Vium310g00010 1086 ProSiteProfiles Zinc finger RING-type profile. 849 889 IPR001841 -
Vium310g00010 1086 CDD SF2_C_SNF 911 1044 - -
Vium310g00010 1086 SMART helicmild6 950 1033 IPR001650 -
Vium310g00010 1086 MobiDBLite consensus disorder prediction 114 128 - -
Vium310g00010 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 390 692 IPR027417 -
Vium310g00010 1086 Gene3D - 454 693 IPR038718 -
Vium310g00010 1086 Gene3D - 708 1086 IPR027417 -
Vium310g00010 1086 Pfam HIRAN domain 194 276 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vium310g00010 1086 SMART ring_2 849 888 IPR001841 -
Vium310g00010 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 1075 IPR027417 -
Vium310g00010 1086 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 842 897 IPR013083 -
Vium310g00010 1086 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 216 1086 - -
Vium310g00010 1086 MobiDBLite consensus disorder prediction 41 71 - -
Vium310g00010 1086 Coils Coil 110 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium310g00010 Vium-Chr310 64027 70379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium310g00010 132 1085 RAD5 or RAD16-like Gene Family AT5G43530 59.709 0.0 1192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium310g00010 SNF2_N 2.3e-79 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium310g00010 K15505 - gmx:100806677 1726.84