Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium310g00009 ATGGAGGAAGAAGAACCTTCCATAACATCACCACCTCCAGGAAGGTTACACAAGTTCCTCTTCCGCGGTGGCAAGCCTGTCATCGCCGCGAAGCCTCTCACTGTGGTCCGCTCCACCACCAGCAACGGCGGCGCGCGCGTTCTTGCCTCGCAGCCAAACCCTAACGAGAACAATGCTCTCCAGGAAGAAGGACAAGGCGAAACCGGCTTCGATGTTTCTTATTTCAAGGCACTGAACAAAAGGCAACAACAACAACAGCAAAGGCTCGAGGAGTTTCTAAAGGGCACGAACACGAAGGTCGCTTCCAAAGGAGAGTCTTTGAAATCGATGGCGCCATTGGAAGAAGAAGTAGAAGAAGAGGAGGAGGAAGGCGATGAGGCAGAATCAACTCCACCGGTTCAACCGGTTAGGATAGTGTCGGAACCGGTTCCACCGGTGCAGACAACAGAGATTAGTGATGATGTGGAGGTGGTGGCGGTGCGCAAGGATGTGGAGAAGAGGAATATTCCTAATCTCGAGGACGGGGAGTTTCCGGAGGAGGCTGGATGGTTCTTGCTTGGGAGGAAGGCTGAGGTTGCGGTTTCGACTGCCAGAGGAGTGCGCAGATTGGTGGACAATGAAATCGTTCATTTCAACTTTCCTCTGCCGACTTACTCGAGAAAGTCTCAGTTGATCGTTCGTGTTTCAACCAAGCGTTCTGGAGAGGTTGGGAGGATGCCAATGGAGTGGGCAAAGATTGTGATTCCACTTATGCGCTCTGGAAAGATCAAGGTTCGAGGCCGATGCATTGCTGCCCCAGATAAACTGGAGATGATGCAAGAGATTCTGTTTTTAGTGAGCTTTTATATTCACAATTCTGTGTTTGCCGACCGTGTTGACACCTCTTGGAGGCTAGAGGCTTGTGGTAAAATTGATGATACTATGTACCCAATTCTTGCCCTATTAAAAATGCTAGAGATCAAGCCATCTCGAAAGGCTGAATTCATGCCAGAAGATATAGATTCTCGAAAGCGGTTGCTCTATCCAAGGGCTGGGTCAGATGAAGCTTCAGCATTGCATTTGATCAAGCGAAGAAAGGGTAGCGAGCCTATTCCCGAGCAAAATAATGACGAACAAGCCCTTTCAGAGTCAGCTTTAAACAAAATTGTTGGAGCTGCAGAAATCTATGACTTAAAGGAGAAGGAAGCCCCAAAGACACTTATGTGTAATCTAAAGCCTTACCAGAAGCAGGCCCTGTATTGGATGGATGAAATCGAGAAGGGAATGGATGTTGAGAGTGCAGAAAGAACTCTGCATCCCTGCTGGTCAGCCTACACTATATGCAAGGGCAGAAGGACTATTTATGTCAATACATTTACCGGAGAAGCTTCAAAGAAATTTCCCAAAACAACTGAGATGGCAAGAGGAGGAATTCTAGCGGATGCAATGGGACTTGGAAAGACCGTTATGACAATTGCTCTGATACTCAGTAATCCAGGCCGAGGCAACTCAGAAAACAAGGATGCAATAAATGGACACGATGATATTATAGCAAATAAAAGGAAGAACGCTTACGCGATGCATAAAGTCGAGGGTGGCACTCTAATTGTTTGTCCCATGGCTTTGTTAGGTCAATGGAAGGATGAGCTTGAAACGCATTCAAAGCGCGGTAGTATATCCATATTTGTTCATTATGGTGGCAGAAGAACCGATGATCTCTTGTTCATCTCTGGGCATGACGTTGTCTTAACAACTTATGGTGTCCTATCAGCTGAATACAAAAATAATGGAGGCAATAGCATCTACCACAAGATCCAATGGTACAGGGTGGTGCTGGACGAAGCTCATAATATAAAAGCCCATAGAAGTCAGGTTTCCCAGGCTGCTTTTACTCTCTCAGCACACAGCCGCTGGTGTCTAACTGGAACACCGCTTCAGAATAGCTTGGAGGACCTATACAGTCTCTTGTGTTTCTTGCGTGTTGAACCTTGGTGCAACTGGGCATGGTGGCAAAAGTTGATTCAAAGGCCTTATGAGAATGGTGATCCAAGATCCTTGAAGCTGGTCAAAGCCATTTTGAGGATGCTAATACTAAGAAGAACGAAGGAATCGAAAGATAAAGAGGGAAGGCCTATACTTCTTCTGCCTCCAATTGACATTGAATTGATTGAATGTAAACAATCAGAGTGTGAACGTGACTTCTACGAAACCCTTTTCGAGCGATCTAAAGTTCAATTTGATCAGTACGTTGCACAAGGAAATGTTCTACACCATTATGCCAATATCCTTGACCTTCTAATGCAGTTGAGACGCTGTTGTAACCATCCGTTTTTGGTTATGTGCGGAAGCGATTCCCGTAAGTATGCAGACTTAGGCAGAATCGCAAGAAGATTTCTTCAGTCTGATACTGGTTCACCCAACGAAAGCAATCAAGATGATCCACAGCTGAAAGCAGAGGTGAACAAACTCGCAAGTATATTACTTAATTCCGCTTCTCCGGACTCTATCCAACCTCGTGCATACATTGAAGAGGTTTTGGAGAATATTCAAAAGGGCGATCCTGGAGAATGCGCAGTATGTTTGGAATCTCCAGAAGATCCTGTGTTTACTCCATGTGCTCATAAATTTTGTAGAGAATGTCTGTTCAGTTGCTGGGGCACCCCAGCGGGTGGCCAATGTCCAATGTGTCGTAATTTGCTCCAGAAAGATGATCTGATCACTTGTCCGTCTGAAAGCCCATTCAAGGTCGATATTAAGAACAATGTGACAGAGTCTTCGAAGTTTTCAAAGCTATTCGAATTCCTGGAAGGTATTCTGAACTCACCCGCGGGTGAAAAGAGTATTGTCTTCAGTCAGTGGACTTCATTTTTTGATCTCTTGGAGAATCCATTGAGGCGGAGGGGCATTGGCTTTTTGAGATATGATGGAAAATTGACGCAGAAACAGAGGGAGAAAGTTCTGGATGAATTCAATAAAACAAGGGAGAAAAGGGTTTTGCTGATGTCGCTAAAGGCTGGTGGTGTAGGCTTGAACTTAACTGCAGCCTCAAATGTTTTCATAATGGATCCGTGGTGGAATCCTGCTCTTGAGGAGCAAGCCATAATGAGAATTCATCGCATAGGACAAAACCGTAGAGTTAAAGTAAGAAGATTCATTGTGAAGGACACAGTGGAAGATCGTTTGCAACAAGTGCATGCCAGGGAACAGAGGATGATATCTGGCACCCTCACCGATGATGAGGTTCGGTCTGCTCGGATCCAAGACCTCAAAATGCTATTCACGTGA 3264 0.4559 MEEEEPSITSPPPGRLHKFLFRGGKPVIAAKPLTVVRSTTSNGGARVLASQPNPNENNALQEEGQGETGFDVSYFKALNKRQQQQQQRLEEFLKGTNTKVASKGESLKSMAPLEEEVEEEEEEGDEAESTPPVQPVRIVSEPVPPVQTTEISDDVEVVAVRKDVEKRNIPNLEDGEFPEEAGWFLLGRKAEVAVSTARGVRRLVDNEIVHFNFPLPTYSRKSQLIVRVSTKRSGEVGRMPMEWAKIVIPLMRSGKIKVRGRCIAAPDKLEMMQEILFLVSFYIHNSVFADRVDTSWRLEACGKIDDTMYPILALLKMLEIKPSRKAEFMPEDIDSRKRLLYPRAGSDEASALHLIKRRKGSEPIPEQNNDEQALSESALNKIVGAAEIYDLKEKEAPKTLMCNLKPYQKQALYWMDEIEKGMDVESAERTLHPCWSAYTICKGRRTIYVNTFTGEASKKFPKTTEMARGGILADAMGLGKTVMTIALILSNPGRGNSENKDAINGHDDIIANKRKNAYAMHKVEGGTLIVCPMALLGQWKDELETHSKRGSISIFVHYGGRRTDDLLFISGHDVVLTTYGVLSAEYKNNGGNSIYHKIQWYRVVLDEAHNIKAHRSQVSQAAFTLSAHSRWCLTGTPLQNSLEDLYSLLCFLRVEPWCNWAWWQKLIQRPYENGDPRSLKLVKAILRMLILRRTKESKDKEGRPILLLPPIDIELIECKQSECERDFYETLFERSKVQFDQYVAQGNVLHHYANILDLLMQLRRCCNHPFLVMCGSDSRKYADLGRIARRFLQSDTGSPNESNQDDPQLKAEVNKLASILLNSASPDSIQPRAYIEEVLENIQKGDPGECAVCLESPEDPVFTPCAHKFCRECLFSCWGTPAGGQCPMCRNLLQKDDLITCPSESPFKVDIKNNVTESSKFSKLFEFLEGILNSPAGEKSIVFSQWTSFFDLLENPLRRRGIGFLRYDGKLTQKQREKVLDEFNKTREKRVLLMSLKAGGVGLNLTAASNVFIMDPWWNPALEEQAIMRIHRIGQNRRVKVRRFIVKDTVEDRLQQVHAREQRMISGTLTDDEVRSARIQDLKMLFT 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium310g00009 1087 CDD DEXDc_SHPRH-like 404 693 - -
Vium310g00009 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 706 1076 IPR027417 -
Vium310g00009 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 390 693 IPR027417 -
Vium310g00009 1087 MobiDBLite consensus disorder prediction 41 64 - -
Vium310g00009 1087 MobiDBLite consensus disorder prediction 100 137 - -
Vium310g00009 1087 Pfam SNF2-related domain 407 771 IPR000330 GO:0005524|GO:0140658
Vium310g00009 1087 SUPERFAMILY RING/U-box 835 895 - -
Vium310g00009 1087 SMART HIRAN_2 186 283 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vium310g00009 1087 SMART ring_2 850 889 IPR001841 -
Vium310g00009 1087 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 920 1087 IPR001650 -
Vium310g00009 1087 Pfam Zinc finger, C3HC4 type (RING finger) 850 889 IPR018957 GO:0046872
Vium310g00009 1087 SMART ultradead3 400 672 IPR014001 -
Vium310g00009 1087 Gene3D - 709 1087 IPR027417 -
Vium310g00009 1087 ProSiteProfiles Zinc finger RING-type profile. 850 890 IPR001841 -
Vium310g00009 1087 MobiDBLite consensus disorder prediction 114 128 - -
Vium310g00009 1087 ProSitePatterns Zinc finger RING-type signature. 865 874 IPR017907 -
Vium310g00009 1087 Pfam Helicase conserved C-terminal domain 927 1034 IPR001650 -
Vium310g00009 1087 Gene3D - 456 694 IPR038718 -
Vium310g00009 1087 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 461 655 IPR014001 -
Vium310g00009 1087 Pfam HIRAN domain 194 276 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vium310g00009 1087 CDD SF2_C_SNF 912 1045 - -
Vium310g00009 1087 MobiDBLite consensus disorder prediction 41 71 - -
Vium310g00009 1087 Coils Coil 110 130 - -
Vium310g00009 1087 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 843 898 IPR013083 -
Vium310g00009 1087 SMART helicmild6 951 1034 IPR001650 -
Vium310g00009 1087 FunFam DNA repair protein RAD5B 458 694 - -
Vium310g00009 1087 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 218 1087 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium310g00009 Vium-Chr310 64026 70379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium310g00009 132 1086 RAD5 or RAD16-like Gene Family AT5G43530 59.709 0.0 1192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium310g00009 SNF2_N 3.2e-79 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium310g00009 K15505 - gmx:100806677 1733.38