Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium310g00003 ATGGATTCCTTAGGTGATAGCAGCTGTTGGGATTTTCTCGATTACTCTTTCATCGATCAAGCGCCCCCTGATTTCCTTTGGCCCAATCATAGTTTGAGCACTGAAATTGAAATTCCAGATGATGCTGTTGCTTGTGAGGAGAACACCAAGAAGAGGGGGCGTACTGATTCATGCTGTAAGGCGGGATCAAAAGCATGCCGTGAGAAATTGCGGAGGGAGAGACTCAATGAAAGGTTCTGTGACCTGAGCTCTGTTTTGGAACCTGGGAGACCTGTGAGAACAGATAAACCATCTATACTTGATGATGCTATCAGAGTCTTGAGCCAACTTAAGTCCGAAGCTCAGGAACTCAAAACAAAAAACGAAAAATTATTAGAGGAAATAAAATGTTTGAAGGCCGAGAAAAACGAACTTCGTGAAGAGAAACTTGTTCTGAAAGCAGATAAGGAAAGGATTGAGAAGCAGTTGAAATCCCTGGCCATTGCTCCAGCAGGGTTTATGGCACCCCCTGTAGCTGCTGCTGCTGCATATCAAGCAGGGGTGAACAAGATGGCTGTTTATCCAAACTATGGCTACATTCCAATGTGGCAATATCTTCCTCAGTCTGCCAGAGATACATCCCAAGATCATGAGCTTAGGCCTCCTGCAGCATAG 654 0.4495 MDSLGDSSCWDFLDYSFIDQAPPDFLWPNHSLSTEIEIPDDAVACEENTKKRGRTDSCCKAGSKACREKLRRERLNERFCDLSSVLEPGRPVRTDKPSILDDAIRVLSQLKSEAQELKTKNEKLLEEIKCLKAEKNELREEKLVLKADKERIEKQLKSLAIAPAGFMAPPVAAAAAYQAGVNKMAVYPNYGYIPMWQYLPQSARDTSQDHELRPPAA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium310g00003 217 Coils Coil 100 155 - -
Vium310g00003 217 FunFam Transcription factor bHLH104 62 143 - -
Vium310g00003 217 PANTHER BHLH TRANSCRIPTION FACTOR 7 217 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Vium310g00003 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 110 IPR011598 GO:0046983
Vium310g00003 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 137 IPR036638 GO:0046983
Vium310g00003 217 Gene3D - 62 143 IPR036638 GO:0046983
Vium310g00003 217 SMART finulus 65 116 IPR011598 GO:0046983
Vium310g00003 217 Pfam Helix-loop-helix DNA-binding domain 63 110 IPR011598 GO:0046983
Vium310g00003 217 CDD bHLH_AtILR3_like 64 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium310g00003 Vium-Chr310 21986 25748 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium310g00003 49 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 67.647 1.28e-76 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium310g00003 HLH 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium310g00003 - - gmx:100787583 354.755