Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium310g00002 ATGGATTTTGTTAGCCAAAGACACCTACTTCATTTACCAATACAAGCTGATTCACCTTGCACAGTTCCTCCAAATCATGATATTCCTCATCCTTCTGGTTCAAATCTTCCCCTCTTAGCAATCCTTGTGCTAGGAATGATGTTCACAACTTTCTTCCTTATAGGCTACTACATGTTAGTTGTCAAGTGCTGCTTCAGTTGGCCCCATGTTAATCACACAAGACTATTTTCTCTGTCCAGACAAGGTGAAGATCCATCTGCTGGATCCGAGCCAAGAGGGCTAGAGGAAGCAGTTATCAGGTTAATCCCTGTGATTCATTACAAGCCAGAAAAAGGGGATACAAACTTTGGTGAAAGAAGCAACCTTGATGATTGTGCAGTTTGCTTGAGTGAGTTTCAACAAGATGAGAAGCTGAGGGTTATACCAAACTGTAGCCATGTCTTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAACACTCATTGCCCTCTCTGCAGAAGAATTGTGTCCTTGACAAGTCAGGTCCATGTTGACCAACCAAACCTTCTCGTTCCAAGGCCTTCATCTCAAGACCAAAGCCAAAACATTGAAAACAATGTCAGTGATGAAGGTTTTGTTGTGATTGATTTGGATGGTGAACTCGATAGAGACCGAAACCTGGAAGGAAGACAAGATTTACCTACCATTGCTGTTTCTTCACAGAAGAATGCAAAGAAGCTTCATAAAGTGATCAGCTTGGGAGATGAGTGTATTGGCATCAGAGCCAAAGGTGAAAGCTTTTCATCAGTTCAAGCCATGAGGAGGTCCTTTTCCATGGATTCATCAGTGGATAGAAAGTTTTATGGGGCAATTCAGCAGGTTTTACAGCAACAACAACAGCATGAACATGTTCATGAGATTAACACAGTTGAAGCCTGTGATGGCAATGACAGAGTGAAGAGATCATTCTTTTCTTTTGGACATGGAAGCAGATCAAGAAATGCTGTACAACCTGTTGATTTGGACCCCTGA 1014 0.4191 MDFVSQRHLLHLPIQADSPCTVPPNHDIPHPSGSNLPLLAILVLGMMFTTFFLIGYYMLVVKCCFSWPHVNHTRLFSLSRQGEDPSAGSEPRGLEEAVIRLIPVIHYKPEKGDTNFGERSNLDDCAVCLSEFQQDEKLRVIPNCSHVFHIDCIDVWLQNNTHCPLCRRIVSLTSQVHVDQPNLLVPRPSSQDQSQNIENNVSDEGFVVIDLDGELDRDRNLEGRQDLPTIAVSSQKNAKKLHKVISLGDECIGIRAKGESFSSVQAMRRSFSMDSSVDRKFYGAIQQVLQQQQQHEHVHEINTVEACDGNDRVKRSFFSFGHGSRSRNAVQPVDLDP 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium310g00002 337 CDD RING-H2_EL5-like 124 167 - -
Vium310g00002 337 FunFam E3 ubiquitin-protein ligase ATL6 83 173 - -
Vium310g00002 337 SMART ring_2 125 166 IPR001841 -
Vium310g00002 337 PANTHER RING-H2 FINGER PROTEIN ATL16 21 333 IPR044600 GO:0016567|GO:0016740
Vium310g00002 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 171 IPR013083 -
Vium310g00002 337 Pfam Ring finger domain 123 167 IPR001841 -
Vium310g00002 337 SUPERFAMILY RING/U-box 108 173 - -
Vium310g00002 337 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium310g00002 Vium-Chr310 15453 16865 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium310g00002 32 337 C3H Transcription Factor Family AT1G04360 37.853 4.56e-65 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium310g00002 - - pvu:PHAVU_007G272700g 484.952