Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium310g00001 ATGGAAGAAGAAGGTTCAAAGGGAAAAGCGAAGGATGAAGAAGAGCATGTAAAGTACAGAGGAGTACGTAGAAGGCCATGGGGAAAATATGCAGCAGAGATTCGTGACTCAATGAAACATGGTCAAAGGTCGTGGCTGGGAACATTCACCACAGCAGAGGATGCTGCTAGAGCCTATGACAGAGCTGCATATGCCATGAGAGGTCCCTTTGCAGTCCTCAATTTTCCCGATGAATATCCTCCTCCGGCTCCGACTGTTTCTTCATCATCTTCTTCTTCGTCTTCTTCGTCTTCTTCGTCTTCGTCTGTGTCCACTTCAAGCCATGGACACGTGGAAAGAAGGGGAAGGGAAAGAAATGAGGATGAAAATCAAGTGTTTGAGTTTGAGTACTTTGATGACAAATTGTTGGAGGAGCTTCTTGGTTATGATGAAGACAAAAGTAAGCATGGGAAGTGA 456 0.4518 MEEEGSKGKAKDEEEHVKYRGVRRRPWGKYAAEIRDSMKHGQRSWLGTFTTAEDAARAYDRAAYAMRGPFAVLNFPDEYPPPAPTVSSSSSSSSSSSSSSSSVSTSSHGHVERRGRERNEDENQVFEFEYFDDKLLEELLGYDEDKSKHGK 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium310g00001 151 PANTHER DNA-BINDING DOMAIN 11 146 IPR044808 GO:0003700|GO:0009873
Vium310g00001 151 MobiDBLite consensus disorder prediction 84 108 - -
Vium310g00001 151 SUPERFAMILY DNA-binding domain 18 78 IPR016177 GO:0003677
Vium310g00001 151 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Vium310g00001 151 MobiDBLite consensus disorder prediction 109 124 - -
Vium310g00001 151 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Vium310g00001 151 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Vium310g00001 151 MobiDBLite consensus disorder prediction 73 124 - -
Vium310g00001 151 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Vium310g00001 151 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Vium310g00001 151 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Vium310g00001 151 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Vium310g00001 151 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium310g00001 Vium-Chr310 8989 9492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium310g00001 13 146 AP2-EREBP Transcription Factor Family AT3G23230 53.731 2.21e-38 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium310g00001 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium310g00001 - - gmx:100781117 171.4