Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3109g00006 ATGAATGTTGCTGAGGTTGAAGAAAATCTAGTGGCTGCAACCGATGCTAAGTTACATGGACAAATGTGCAAGACTCTTTCTATAATATATTGCAAAGTACTGTCTGTATTTCCTTCTTTAGAAGCTGCCAGGCCTAGGAGTAAATCTGGTATTCAGGCATTATGTTCATTGCATGTAGCCTTGGAGAAAGTCAAGAATGTTCTTCAGCACTGCGCAGAGTGTAGTAAACTTTACTTGGCTATAACTGCTGATTCCGTCCTCCTAAAATTTGAGAAGGCTAAATCTGCTCTTGAAGATAGTCTTAGACGAGTGGAAGAAATTGTTCCTCTATCTATTGGGTGTCAGGTTCAGGAGATTGTGCACGAGTTTGTGACAATAGAATTTGCACTTGACCCATCAGAAAAGCAAGTTGGCAATGATTTGATTGCATTGCTCCAACAGGGGAGAAAGTTTAATGATTCTAGTGACAGCAATGAGCTTGAATGTTTCCACCAGGCTGCTGCTAGACTCGGAATTACATCTTCAAGAGCAGCTCTTGCCGAAAGAAGAGCTCTCAAGAAACTCCTAGAAAGGGCTCGATCAGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTCTTGCATCTTATGAGGAAATACTCCAAATTATTTAGAAGTGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCACTGTTCAGGGATCTATTGAGGACAGTGTTCCTGGTAGTCATTGTCAAGCCTTTGACAGGCAGCTTTCAAAATTCAGTTGCTTTAATTTTAAACCAAATAGTGGTAGGAAATCAGGGCAGATGCCACTTCCACCTGAAGAGTTAAGGTGTCCTATATCTCTGCAACTTATGTATGATCCTGTTATCATTGCTTCTGGGCAAACATATGAAAGAGTTTGCATAGAGAAATGGTTCAGTGATGGGCACAACAACTGCCCAAAGACGCAGCAGGAACTTTCACATCTTTGTTTAACTCCTAATTACTGTGTTAAGGGCCTTGTTACTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGAAGGTCCTCCTGAATCTCTTGACCTTAATTACTGGCAGTTATTATCAGAGTCTGAATCTTCAAGTTCAAAAGCTGTAAATAGTGTCAGCTCTTGCAAGTTGAAGGGTGTTGAAGCGGTTCCTTTGGAAGAGAGTGGTATCTCAGAGGAATCTGTGGAAAAGGGAACTGAAATTGTGTCTGCACAAGAGGAAGACATAGAGCAGTGTTTTAGCTTTCTGAAAGTTTTGACTGAGGGGAATAATTGGAGTAAGCAATGTGAAGTGGTAGAACATTTAAGGTTGCTGCTGAGGGATGACGAGGAAGCCCGGATTTTGTTGGGGGCTAATGGGTTTGTCGAAGCACTTCTGCACTTCTTGCAATCAGCTGTGCATGAAGGTAGTTTGATGGCTGTGGAAAGTGGAACAATGGCTCTCTTCAACCTGGCTGTGAATAATAACAGAAATAAGGAAATTATGTTATCAGCTGGAGTATTATCGTTGTTGGAAGAGATGATTTCAAAAACTAGTTCTTATGGTTGTATTACCGCTCTTTATTTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCAATGATTGGCATGAGTCAGGCTATCCAGTTCCTAATCCAGCTTCTCCAATCGGACTCTGATGTTCAATGCAAGCAAGATGCTCTCCATTCTCTCTATAATCTTTCTACTATGGCCTCCAATATTCAACACCTCCTTTCATCTGGCATCATTAGTGGCTTACAGTTCCTTCTTGAAGGCGACACTGATTGCTTGTGGACAGAGAGATGCATAGCTGTTTTGATAAATTTAGCTGCTTCTGATGTTGGAAGGGAGGAAATTGTATCAACTCCTGGACTCATTAGTGCACTGGCTTCTATACTGGACACTGATGAGCTCTTGGAACAGGAGCAAGCAGTCACTTGTCTCCTAATTTTGTGCAATAGAAGTGAGGAGTGTTGTGACATGGTCTTGCAAGAAGGGGTTATACCAGCATTGGTTTCAATATCAGTGAATGGGACCCCAAGAGGCAGAGAAAAAGCTCAGAAACTGTTGATGCTGTTCCGAGAGCAGCGGCGGGACCATTCACCAGTTAAGACACATCAGTGCCCACCTGAAACTGCTGATTTGTCTATGCCTCCAGCTGAAATGAAACCGCTATGCAAGTCAATTTCAAGAAGAAAGTCTGGGAGAACTTTTAGCTTTTTCTGGAAAAGCAAGAGCTATTCTGTCTACCAGTGCTGA 2292 0.4219 MNVAEVEENLVAATDAKLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKVKNVLQHCAECSKLYLAITADSVLLKFEKAKSALEDSLRRVEEIVPLSIGCQVQEIVHEFVTIEFALDPSEKQVGNDLIALLQQGRKFNDSSDSNELECFHQAAARLGITSSRAALAERRALKKLLERARSEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPTVQGSIEDSVPGSHCQAFDRQLSKFSCFNFKPNSGRKSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQELSHLCLTPNYCVKGLVTSWCEQNGVPIPEGPPESLDLNYWQLLSESESSSSKAVNSVSSCKLKGVEAVPLEESGISEESVEKGTEIVSAQEEDIEQCFSFLKVLTEGNNWSKQCEVVEHLRLLLRDDEEARILLGANGFVEALLHFLQSAVHEGSLMAVESGTMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTSSYGCITALYLNLSCLEEAKPMIGMSQAIQFLIQLLQSDSDVQCKQDALHSLYNLSTMASNIQHLLSSGIISGLQFLLEGDTDCLWTERCIAVLINLAASDVGREEIVSTPGLISALASILDTDELLEQEQAVTCLLILCNRSEECCDMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQRRDHSPVKTHQCPPETADLSMPPAEMKPLCKSISRRKSGRTFSFFWKSKSYSVYQC 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3109g00006 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Vium3109g00006 763 SUPERFAMILY ARM repeat 426 704 IPR016024 -
Vium3109g00006 763 Gene3D - 422 606 IPR011989 -
Vium3109g00006 763 Coils Coil 175 195 - -
Vium3109g00006 763 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Vium3109g00006 763 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Vium3109g00006 763 Coils Coil 87 107 - -
Vium3109g00006 763 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Vium3109g00006 763 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Vium3109g00006 763 SUPERFAMILY RING/U-box 279 355 - -
Vium3109g00006 763 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Vium3109g00006 763 PANTHER U BOX DOMAIN-CONTAINING 21 708 - -
Vium3109g00006 763 SMART arm_5 539 580 IPR000225 GO:0005515
Vium3109g00006 763 SMART arm_5 454 498 IPR000225 GO:0005515
Vium3109g00006 763 CDD RING-Ubox_PUB 281 333 IPR045210 -
Vium3109g00006 763 Gene3D - 607 726 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3109g00006 Vium-Chr3109 97575 102402 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3109g00006 1 762 U-box Gene Family AT1G24330 65.296 0.0 1013
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3109g00006 - - gmx:100794099 1309.28