Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3106g00003 ATGGACGCAGGATACAATCCTCGTACGGTCGAAGAGGTCTTTAGGGATTTCAAAGGTCGCAGAGCTGCTCTGATTAAAGCTCTCACCACTGATGTTGAAGAGTTCTACCAGCAGTGTGATCCCGAGAAGGAAAATCTTTGCCTTTATGGATTTCCAAGTGAGCAGTGGGAAGTCAATCTGCCAGCTGAGGAGGTGCCTCCAGAGCTTCCAGAGCCAGCATTAGGTATTAACTTTGCCAGAGATGGGATGCAGGATAAGGACTGGCTGTCTTTGGTTGCTGTACACAGTGATGCTTGGTTACTTGCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGGTTTGACAAGGCTGATAGGAAGCGACTATTTAACATGATTAATGATCTTCCAACTATATTTGAGGTTGTTACTGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCAAATCATAGCAGTAACAAGTCAAAATCAAACTCTAAGCGAGGTTCTGAATCAAAGAACACAAAAGCAATGCAATCAAAGGACGAGGATGATGAGGGTGTGGCTTTGGAAGCTGATGATGAAGAGGAGCATGAAGAGACTTTCTGTGGGGCATGTGGAGAGAGCTACACTTCTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAATGGTTCCATGGCAAGTGCGTGAAGATTACACCTGCAAGAGCTGAGCACATCAAGCAGTACAAATGTCCATCCTGCAGCAACAAGAGAGCTAGACCTTGA 756 0.4497 MDAGYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSNKSKSNSKRGSESKNTKAMQSKDEDDEGVALEADDEEEHEETFCGACGESYTSDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3106g00003 251 Pfam PHD-finger 197 247 IPR019787 -
Vium3106g00003 251 CDD PHD_AL_plant 197 247 IPR044104 -
Vium3106g00003 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 246 IPR013083 -
Vium3106g00003 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Vium3106g00003 251 SMART PHD_3 197 245 IPR001965 -
Vium3106g00003 251 Pfam Alfin 9 137 IPR021998 GO:0006355|GO:0042393
Vium3106g00003 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Vium3106g00003 251 SUPERFAMILY FYVE/PHD zinc finger 188 248 IPR011011 -
Vium3106g00003 251 MobiDBLite consensus disorder prediction 142 191 - -
Vium3106g00003 251 FunFam PHD finger alfin-like protein 189 246 - -
Vium3106g00003 251 MobiDBLite consensus disorder prediction 159 180 - -
Vium3106g00003 251 PANTHER CPG BINDING PROTEIN 6 250 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3106g00003 Vium-Chr3106 18812 22409 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3106g00003 3 250 Alfin-like Transcription Factor Family AT3G42790 77.108 5.66e-127 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vium3106g00003 Alfin 2.6e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3106g00003 K26274 - gmx:100797908 466.848