Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3106g00002 ATGAGTTCGAGTCCAACAACGTACGAGGAATCGCAACCCCACCCGCCCCAAGAAATAGATTGGCACATGCTCGACAAGTCCAAGTTCTTCTGCATAGGAACAGCCCTCTTCTCCGCCGTCTCCGCCGCCCTCTACCCCGCCATCGTTTTGAAGACACGTCAGCAAATGTCCGCCGCCGGAATCTCGTGCCGCCACATGTCGCGCTCCATCATGCGTTACGAGGGCTTCCGAGGTTTCTACCGAGGCTTCGGCACCTCCTTGATGGGAGCAATCCCCGCACGTGCACTTTACATGTCGGCGCTCGAAGTCACCAAGAGTAAAGTCGCCTCCGCCACCCTTCGATGGGGGTTCTCCGATGCCTCTGCCACTGCAATCGCTAATGCCGCAGGAGGAGTAGCTTCTGCCATGGCAGCACAGTTGGTGTGGACCCCAGTCGATGTCGTTAGCCAGAGACTCATGGTACAAGGAGTGTGCTACAGAAATGGTTTTGACGCATTCAGAAAAATTATGGGTGTGGACGGTCCAAGAGGGTTCTACAGGGGATTCGGGGTTTCCATTGTGACGTACGCTCCCTCCAACGCGGTCTGGTGGGCTTCGTATTCGATGGTGCAGAAGCTTATCTGGGGCACGATGGGTTCGAAGAACGAGGGTTTGAGCTTGGGACGCGATTCGAGGATGGTGATGGGAGTGCAAGGGTTAAGTGCAGTTATGGCAAGTGGGGTTTGTGCATTAGTGACGATGCCACTGGATACGATAAAGACGAGGTTACAGGTGTTGGAGGCAGATGAAGTGAGGGTCGTTGAGGTCGTAAGAGATTTGGTGAGGGAAGGAGGGGTTTTGGCTTGTTATCGAGGGTTGGGACCAAGGTGTGTGTCCATGTCCATGTCTGCCGCCGCCATGATTACTACATATGAGTTCTTGAAACGTGTGTCGGCTAAGAATGCTGATAGATTAGCACTGTATTCAGTCTAG 972 0.5391 MSSSPTTYEESQPHPPQEIDWHMLDKSKFFCIGTALFSAVSAALYPAIVLKTRQQMSAAGISCRHMSRSIMRYEGFRGFYRGFGTSLMGAIPARALYMSALEVTKSKVASATLRWGFSDASATAIANAAGGVASAMAAQLVWTPVDVVSQRLMVQGVCYRNGFDAFRKIMGVDGPRGFYRGFGVSIVTYAPSNAVWWASYSMVQKLIWGTMGSKNEGLSLGRDSRMVMGVQGLSAVMASGVCALVTMPLDTIKTRLQVLEADEVRVVEVVRDLVREGGVLACYRGLGPRCVSMSMSAAAMITTYEFLKRVSAKNADRLALYSV 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3106g00002 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 27 107 IPR018108 -
Vium3106g00002 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 206 IPR018108 -
Vium3106g00002 323 Pfam Mitochondrial carrier protein 40 107 IPR018108 -
Vium3106g00002 323 Pfam Mitochondrial carrier protein 123 207 IPR018108 -
Vium3106g00002 323 Pfam Mitochondrial carrier protein 232 314 IPR018108 -
Vium3106g00002 323 PRINTS Mitochondrial carrier protein signature 80 98 IPR002067 GO:0055085
Vium3106g00002 323 PRINTS Mitochondrial carrier protein signature 131 153 IPR002067 GO:0055085
Vium3106g00002 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 226 310 IPR018108 -
Vium3106g00002 323 Gene3D Mitochondrial carrier domain 29 319 IPR023395 -
Vium3106g00002 323 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 9 315 - -
Vium3106g00002 323 SUPERFAMILY Mitochondrial carrier 23 307 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3106g00002 Vium-Chr3106 5164 6810 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3106g00002 9 316 Chloroplast and Mitochondria Gene Families AT1G72820 60.714 1.01e-138 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3106g00002 K15121 - gmx:100797365 442.195