Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00087 ATGGATGAAAGCTGGAGTGAGGGGAAAAGGAGAATGAATTATAAGGAGGAAGAAGATGATGATTATGAGGAGGAGGAAGAGGAGGAGGGAAGTGAGTACGGAGAGGACGGTAGGAAGAAGAGGGTGGTCACTAACAAGAGAGGCTCCAAAGCTGGAGGCTCAATGCCACCTTCATGTCAAGTTGATGGTTGTAATGCTGATCTCAGTGATGCCAAGCCCTACCACAGGCGTCACAAGGTTTGTGAGTACCATGCCAAGGCTCCTGCAGTTCTCATTGCAGAGCAGCATCAACGGTTTTGCCAACAATGCAGTAGGTTTCATGAGCTATCAGAATTTGATGAATCAAAAAGGAGTTGTAGAAGGCGTTTGGCCGGACATAACGAGAGGCGTCGCAAAAATGCATCTGAATATGGGCATTGA 420 0.4738 MDESWSEGKRRMNYKEEEDDDYEEEEEEEGSEYGEDGRKKRVVTNKRGSKAGGSMPPSCQVDGCNADLSDAKPYHRRHKVCEYHAKAPAVLIAEQHQRFCQQCSRFHELSEFDESKRSCRRRLAGHNERRRKNASEYGH 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00087 139 ProSiteProfiles Zinc finger SBP-type profile. 56 133 IPR004333 GO:0003677
Vium3104g00087 139 MobiDBLite consensus disorder prediction 1 63 - -
Vium3104g00087 139 MobiDBLite consensus disorder prediction 114 139 - -
Vium3104g00087 139 FunFam Squamosa promoter-binding-like protein 14 50 120 - -
Vium3104g00087 139 MobiDBLite consensus disorder prediction 1 17 - -
Vium3104g00087 139 Gene3D - 49 120 IPR036893 GO:0003677|GO:0005634
Vium3104g00087 139 SUPERFAMILY SBT domain 57 136 IPR036893 GO:0003677|GO:0005634
Vium3104g00087 139 Pfam SBP domain 59 132 IPR004333 GO:0003677
Vium3104g00087 139 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 31 134 IPR044817 GO:0003677
Vium3104g00087 139 MobiDBLite consensus disorder prediction 18 32 - -
Vium3104g00087 139 PIRSF SBP 5 139 IPR017238 GO:0003677|GO:0003700|GO:0009908
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00087 Vium-Chr3104 563801 565783 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3104g00087 59 136 SBP-box Gene Family AT2G33810 74.359 1.53e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium3104g00087 SBP 5.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00087 - - vra:106775516 268.47