Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00080 ATGTCTCTCCCTGACTCTCCTGTGCCCGATGATATCGAGACCGATCCATCCGAAGAAGAGGAAGAAGTCGAAGAAGAAACAGAGGAGGAGGACGAAGCTGAAGAAGTGGAAGAGGAGGAGATTGAGGAAGAAGTAGAGGAGGAAGATTTTGAAGAAGAGGTAGAGGAGGAAGAGGTCGAGGAAGTAGATGAGGAAGAGGTCGAGGAAGTAGATGAGGAAGAGGTCGAGGAAGTAGAGGAGGAAGAGGAAGTGGAAGAGACGGAGTTAGAAGAAGAGGAAGACGAAGAGGGAGAGGGAGAACAAGAAGTAGAGGAAGTGGAGGTAGAGGAAGAAGAGATAGAGGGAGAAGAAGAAGAAGAAGAAGTAGAAGTTGAGGTAGAAGAAGAGGAAGAGGGAGAACAAGAATTAGAAGAAGGGGAGGAAGAAGTCCAAGAGGATGAAGGAGAAGAAGAGAAACAAGAACAAGAAGCACTGGAGGATAATAAAGAAGACCAACAACAGAAACAAAAAGAAGCAGTGGAGGAGAAGAAGGAAGAGCAACCACAACAACAAGAAGCAGCAGCGAAGGAGAAGAAGGAAGAGCAACGACAGCAACAAGAAGAAGCAGTGGAGGAGAAGAAGAAAGAGCAAGAACAGCAACAAGAAAAAGCTATGGAGGAGAAGAAGAAAGAACAACAATTGAAACAAGAAGCAATAAAAGAGAAAGAGGGACAACAAAAAGAAGCAGTAAGGGAGGACAGATTGGCGGTGACAGGTTCTCCATCCGATGCTGATTTGAGCCTACAAATGGAGTCTAAGGAACAAGACAAAAACTTGGGGCCAGATTATTCTGTGGCTGAAAACCCTGAAGTAATTCCACCATCTAGTGTGCATTGCATGGAAGAGACTGATGCCATGCTCAAAATATCTGTTCCTTCATGTGAGATACTGACATTGAGAAAGGAAGAGCTTCACCTGAAATATGACATTTCAAGTCATTCGAAATCTAGAGAAAATCTGACTAATGTTGAAAATTGTAGAAGTCAAGGACTAGAAGTTGATGTTGAAAATGCTGGATCCCTTCTACAGAAGGAAACACAGGGTGGATACAGTGAGTTAGGTTGCAATAGCAAGGCTAATTTATGTGATGATAATGATATTGATTCCAGGGTCAGGGCCACCAAGTCATCTAGTGATACTGGACAAGTTATGGTCAATTGCCTGCTTCCAAAAGATTGTATTGTTGAGGATGCTAGTGGTGGTCAGAGTTCTAGGAACAATATCAAGCAGTTAGAGAGGGAGGAGTCAAGGGATGATATGAAGCAAACACTGTCAAGGACTAGAAGTATGTCTCCCAGTGCTGAGATTAAAAACACAAACAAACGACCAAAAATTATATGTGATTTTTTTGCTAAAGGATGGTGTATCAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGATACTGTGGATAAGACAGATCAGGAGGCTGAAGCTGACTTAGTTACTGCTCATCAGAAGAGAAAATTGAAAGTGGAAGAAGGTGTTAAGGACAATGTTCAGAGAATAAGGATGAATGAGCAAGAACAAACTCCTAGTTGGCATCCATCTCAAGAAAAACAGAACTTTACGCTGAGGGACAACTTGTTTCCAGAGAATAGATTTGCATTTAGTTCAACAAGCAATTATTTCAACCTAAATCAGGATGGAATGACTACTCTTCGGAACCAACATATATACAAAGGACATGCTTCCACTCTTTTGAACCATTCACCAAATTCAAGCCTGGTTACTCAATTTCCATCTTCAAGTATGTCACTCTCTCACCGGATTTCTTCTCAATCAGCATGCTCATTGCCTTTTAGTTCATCTTTGGGGGCTGGTACCCAAAAGATTTTGAGCACTGATAAAGAATATCTCACATTTAAGTCCACTTTCTCTGGTTCAGGGCGGGAGGATTTTCGTCTAGTTAGTTCTTCCAGCGTTCCATCTTATCCCACTGGATATAAATCAAAACTCTGTTCTTATGATTGGGAACCTTCTGTGCCCTTCCGGCCTTCCTTTTTTATTACTCCCATGAATGTATCATCTCCTGGAGATCTTTATGATCCTCTTCGCGATAGCATTGAGATACCTAATATAGGGGATGGGTCTTTGAAGGCTTCCCTTTTAATTCAAGGATCTAACGTACTGGCTTCATCACAGGCTCCGATTTATGGTGATTCTGCTGTGATTGGGAAATACACGTCCAGTGTTAATGATGACAAAAGTTCTGTATCTTCTCATAATAAACTTTATGAAAATGAGCCAAACAAAAACTCTGTTCCTCATGAAAAGAATACTGAAACAGAGATAACGTCAGGAACTTGTGTAAACTATCAAAATGGTAAAATTGGCACGGGACAAAATACCTTAGGTGTTGCAGATAGTACAAAAAAGGAGAGAGAAATGACTGAGCATGATGCTAGACGACATGGTGAAGGATCAGGGCACAAAACAAAGAGAGGAGACAGGGATAAGAAAAATCATGAAATAGATGTTGACTTTCAGATGGATGGCACCATGCAGAAGGAACCAAAGGCACTAAAAATGTTACGTGCAGCTCTTGTTGATCATGTAAAAGAGTTGTTAAAACCAGTTTGGCATGAGGGTCGTCTTAGCAAGGATGCACATATTATGATAGTCAGAAAATCAGTTGACAAGGTTGTTAGCACCATAGAGCCCCATCAGATTGCTACCATAGATACTGCCAAGCAATATGTTTCTTCAAGTCGGGCAAAAATTGCAAAGCTGGTCAATGGATATGTCAACAAATATGGCAAATCTTGA 2808 0.412 MSLPDSPVPDDIETDPSEEEEEVEEETEEEDEAEEVEEEEIEEEVEEEDFEEEVEEEEVEEVDEEEVEEVDEEEVEEVEEEEEVEETELEEEEDEEGEGEQEVEEVEVEEEEIEGEEEEEEVEVEVEEEEEGEQELEEGEEEVQEDEGEEEKQEQEALEDNKEDQQQKQKEAVEEKKEEQPQQQEAAAKEKKEEQRQQQEEAVEEKKKEQEQQQEKAMEEKKKEQQLKQEAIKEKEGQQKEAVREDRLAVTGSPSDADLSLQMESKEQDKNLGPDYSVAENPEVIPPSSVHCMEETDAMLKISVPSCEILTLRKEELHLKYDISSHSKSRENLTNVENCRSQGLEVDVENAGSLLQKETQGGYSELGCNSKANLCDDNDIDSRVRATKSSSDTGQVMVNCLLPKDCIVEDASGGQSSRNNIKQLEREESRDDMKQTLSRTRSMSPSAEIKNTNKRPKIICDFFAKGWCIRGSSCSFLHIKDTVDKTDQEAEADLVTAHQKRKLKVEEGVKDNVQRIRMNEQEQTPSWHPSQEKQNFTLRDNLFPENRFAFSSTSNYFNLNQDGMTTLRNQHIYKGHASTLLNHSPNSSLVTQFPSSSMSLSHRISSQSACSLPFSSSLGAGTQKILSTDKEYLTFKSTFSGSGREDFRLVSSSSVPSYPTGYKSKLCSYDWEPSVPFRPSFFITPMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIQGSNVLASSQAPIYGDSAVIGKYTSSVNDDKSSVSSHNKLYENEPNKNSVPHEKNTETEITSGTCVNYQNGKIGTGQNTLGVADSTKKEREMTEHDARRHGEGSGHKTKRGDRDKKNHEIDVDFQMDGTMQKEPKALKMLRAALVDHVKELLKPVWHEGRLSKDAHIMIVRKSVDKVVSTIEPHQIATIDTAKQYVSSSRAKIAKLVNGYVNKYGKS 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00080 935 MobiDBLite consensus disorder prediction 1 261 - -
Vium3104g00080 935 SUPERFAMILY CCCH zinc finger 454 478 IPR036855 GO:0046872
Vium3104g00080 935 MobiDBLite consensus disorder prediction 792 835 - -
Vium3104g00080 935 Coils Coil 19 241 - -
Vium3104g00080 935 MobiDBLite consensus disorder prediction 158 247 - -
Vium3104g00080 935 ProSiteProfiles Zinc finger C3H1-type profile. 454 481 IPR000571 GO:0046872
Vium3104g00080 935 SMART c3hfinal6 455 480 IPR000571 GO:0046872
Vium3104g00080 935 MobiDBLite consensus disorder prediction 421 437 - -
Vium3104g00080 935 MobiDBLite consensus disorder prediction 411 448 - -
Vium3104g00080 935 MobiDBLite consensus disorder prediction 802 835 - -
Vium3104g00080 935 MobiDBLite consensus disorder prediction 744 773 - -
Vium3104g00080 935 Gene3D - 446 530 - -
Vium3104g00080 935 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 50 934 - -
Vium3104g00080 935 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 459 478 IPR000571 GO:0046872
Vium3104g00080 935 MobiDBLite consensus disorder prediction 744 763 - -
Vium3104g00080 935 MobiDBLite consensus disorder prediction 11 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00080 Vium-Chr3104 500204 506437 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium3104g00080 zf-CCCH 8.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00080 - - vra:106775763 1318.91