Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00079 ATGTCTCTCCCTGACTCTCCTGTGCCCGATGATATCGAGACCGATCCATCCGAAGAAGAGGAAGAAGTCGAAGAAGAAACAGAGGAGGAGGACGAAGCTGAAGAAGTGGAAGAGGAGGAGATTGAGGAAGAAGTAGAGGAGGAAGATTTTGAAGAAGAGGTAGAGGAGGAAGAGGTCGAGGAAGTAGATGAGGAAGAGGTCGAGGAAGTAGATGAGGAAGAGGTCGAGGAAGTAGAGGAGGAAGAGGAAGTGGAAGAGACGGAGTTAGAAGAAGAGGAAGACGAAGAGGGAGAGGGAGAACAAGAAGTAGAGGAAGTGGAGGTAGAGGAAGAAGAGATAGAGGGAGAAGAAGAAGAAGAAGAAGTAGAAGTTGAGGTAGAAGAAGAGGAAGAGGGAGAACAAGAATTAGAAGAAGGGGAGGAAGAAGTCCAAGAGGATGAAGGAGAAGAAGAGAAACAAGAACAAGAAGCACTGGAGGATAATAAAGAAGACCAACAACAGAAACAAAAAGAAGCAGTGGAGGAGAAGAAGGAAGAGCAACCACAACAACAAGAAGCAGCAGCGAAGGAGAAGAAGGAAGAGCAACGACAGCAACAAGAAGAAGCAGTGGAGGAGAAGAAGAAAGAGCAAGAACAGCAACAAGAAAAAGCTATGGAGGAGAAGAAGAAAGAACAACAATTGAAACAAGAAGCAATAAAAGAGAAAGAGGGACAACAAAAAGAAGCAGTAAGGGAGGACAGATTGGCGGTGACAGGTTCTCCATCCGATGCTGATTTGAGCCTACAAATGGAGTCTAAGGAACAAGACAAAAACTTGGGGCCAGATTATTCTGTGGCTGAAAACCCTGAAGTAATTCCACCATCTAGTGTGCATTGCATGGAAGAGACTGATGCCATGCTCAAAATATCTGTTCCTTCATGTGAGATACTGACATTGAGAAAGGAAGAGCTTCACCTGAAATATGACATTTCAAGTCATTCGAAATCTAGAGAAAATCTGACTAATGTTGAAAATTGTAGAAGTCAAGGACTAGAAGTTGATGTTGAAAATGCTGGATCCCTTCTACAGAAGGAAACACAGGGTGGATACAGTGAGTTAGGTTGCAATAGCAAGGCTAATTTATGTGATGATAATGATATTGATTCCAGGGTCAGGGCCACCAAGTCATCTAGTGATACTGGACAAGTTATGGTCAATTGCCTGCTTCCAAAAGATTGTATTGTTGAGGATGCTAGTGGTGGTCAGAGTTCTAGGAACAATATCAAGCAGTTAGAGAGGGAGGAGTCAAGGGATGATATGAAGCAAACACTGTCAAGGACTAGAAGTATGTCTCCCAGTGCTGAGATTAAAAACACAAACAAACGACCAAAAATTATATGTGATTTTTTTGCTAAAGGATGGTGTATCAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGATACTGTGGATAAGACAGATCAGGAGGCTGAAGCTGACTTAGTTACTGCTCATCAGAAGAGAAAATTGAAAGTGGAAGAAGGTGTTAAGGACAATGTTCAGAGAATAAGGATGAATGAGCAAGAACAAACTCCTAGTTGGCATCCATCTCAAGAAAAACAGAACTTTACGCTGAGGGACAACTTGTTTCCAGAGAATAGATTTGCATTTAGTTCAACAAGCAATTATTTCAACCTAAATCAGGATGGAATGACTACTCTTCGGAACCAACATATATACAAAGGACATGCTTCCACTCTTTTGAACCATTCACCAAATTCAAGCCTGGTTACTCAATTTCCATCTTCAAGGCGGGAGGATTTTCGTCTAGTTAGTTCTTCCAGCGTTCCATCTTATCCCACTGGATATAAATCAAAACTCTGTTCTTATGATTGGGAACCTTCTGTGCCCTTCCGGCCTTCCTTTTTTATTACTCCCATGAATGTATCATCTCCTGGAGATCTTTATGATCCTCTTCGCGATAGCATTGAGATACCTAATATAGGGGATGGGTCTTTGAAGGCTTCCCTTTTAATTCAAGGATCTAACGTACTGGCTTCATCACAGGCTCCGATTTATGGTGATTCTGCTGTGATTGGGAAATACACGTCCAGTGTTAATGATGACAAAAGTTCTGTATCTTCTCATAATAAACTTTATGAAAATGAGCCAAACAAAAACTCTGTTCCTCATGAAAAGAATACTGAAACAGAGATAACGTCAGGAACTTGTGTAAACTATCAAAATGGTAAAATTGGCACGGGACAAAATACCTTAGGTGTTGCAGATAGTACAAAAAAGGAGAGAGAAATGACTGAGCATGATGCTAGACGACATGGTGAAGGATCAGGGCACAAAACAAAGAGAGGAGACAGGGATAAGAAAAATCATGAAATAGATGTTGACTTTCAGATGGATGGCACCATGCAGAAGGAACCAAAGGCACTAAAAATGTTACGTGCAGCTCTTGTTGATCATGTAAAAGAGTTGTTAAAACCAGTTTGGCATGAGGGTCGTCTTAGCAAGGATGCACATATTATGATAGTCAGAAAATCAGTTGACAAGGTTGTTAGCACCATAGAGCCCCATCAGATTGCTACCATAGATACTGCCAAGCAATATGTTTCTTCAAGTCGGGCAAAAATTGCAAAGCTGGTCAATGGATATGTCAACAAATATGGCAAATCTTGA 2670 0.412 MSLPDSPVPDDIETDPSEEEEEVEEETEEEDEAEEVEEEEIEEEVEEEDFEEEVEEEEVEEVDEEEVEEVDEEEVEEVEEEEEVEETELEEEEDEEGEGEQEVEEVEVEEEEIEGEEEEEEVEVEVEEEEEGEQELEEGEEEVQEDEGEEEKQEQEALEDNKEDQQQKQKEAVEEKKEEQPQQQEAAAKEKKEEQRQQQEEAVEEKKKEQEQQQEKAMEEKKKEQQLKQEAIKEKEGQQKEAVREDRLAVTGSPSDADLSLQMESKEQDKNLGPDYSVAENPEVIPPSSVHCMEETDAMLKISVPSCEILTLRKEELHLKYDISSHSKSRENLTNVENCRSQGLEVDVENAGSLLQKETQGGYSELGCNSKANLCDDNDIDSRVRATKSSSDTGQVMVNCLLPKDCIVEDASGGQSSRNNIKQLEREESRDDMKQTLSRTRSMSPSAEIKNTNKRPKIICDFFAKGWCIRGSSCSFLHIKDTVDKTDQEAEADLVTAHQKRKLKVEEGVKDNVQRIRMNEQEQTPSWHPSQEKQNFTLRDNLFPENRFAFSSTSNYFNLNQDGMTTLRNQHIYKGHASTLLNHSPNSSLVTQFPSSRREDFRLVSSSSVPSYPTGYKSKLCSYDWEPSVPFRPSFFITPMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIQGSNVLASSQAPIYGDSAVIGKYTSSVNDDKSSVSSHNKLYENEPNKNSVPHEKNTETEITSGTCVNYQNGKIGTGQNTLGVADSTKKEREMTEHDARRHGEGSGHKTKRGDRDKKNHEIDVDFQMDGTMQKEPKALKMLRAALVDHVKELLKPVWHEGRLSKDAHIMIVRKSVDKVVSTIEPHQIATIDTAKQYVSSSRAKIAKLVNGYVNKYGKS 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00079 889 MobiDBLite consensus disorder prediction 1 261 - -
Vium3104g00079 889 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 125 888 - -
Vium3104g00079 889 Gene3D - 446 530 - -
Vium3104g00079 889 MobiDBLite consensus disorder prediction 756 789 - -
Vium3104g00079 889 MobiDBLite consensus disorder prediction 698 727 - -
Vium3104g00079 889 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 459 478 IPR000571 GO:0046872
Vium3104g00079 889 MobiDBLite consensus disorder prediction 698 717 - -
Vium3104g00079 889 Coils Coil 19 241 - -
Vium3104g00079 889 MobiDBLite consensus disorder prediction 158 247 - -
Vium3104g00079 889 ProSiteProfiles Zinc finger C3H1-type profile. 454 481 IPR000571 GO:0046872
Vium3104g00079 889 SMART c3hfinal6 455 480 IPR000571 GO:0046872
Vium3104g00079 889 MobiDBLite consensus disorder prediction 421 437 - -
Vium3104g00079 889 MobiDBLite consensus disorder prediction 746 789 - -
Vium3104g00079 889 MobiDBLite consensus disorder prediction 411 448 - -
Vium3104g00079 889 SUPERFAMILY CCCH zinc finger 454 478 IPR036855 GO:0046872
Vium3104g00079 889 MobiDBLite consensus disorder prediction 11 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00079 Vium-Chr3104 500204 522495 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium3104g00079 zf-CCCH 7.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00079 - - vra:106775763 1196.03