Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00076 ATGATGGCGTCTTCTTCTTCTTCGGGCTCTCGCGAGGGGCACTACAGAGGCGTCAGGAAGCGACCCTGGGGACGCTACGCCGCCGAAATACGTGACCCGTGGAAGAAGACACGTGTCTGGTTGGGCACATTCGATACTCCCGAGGAGGCCGCCCTCGCCTACGACGGCGCCGCCCGTTCTCTCCGCGGCGCCAAGGCCAAGACCAACTTCCCCCCGGCTCCCGCCCTCTGCCTCGACCTCAACGCCCCTTCTTCCGATCACCGCTGGCCCAACGTCCCCTCCCGTACCCTCGTCCTCACCGAGTTCCTCCACACCGCCGTTCTCAAAGACATCGAACCGCCGCAGCCTCTTCCCCCTGCCACCACCGCTCTCCGCCGCCCCGACGCCGGCGTTCCTCTCGGTGGCGGAGTTCAGGTGGTGGAGAGCTCCCCGACGGCGTCGTTTTTGGGACTCGTTCGGCGCGGGATCCCCATCGACTTGAACGAGCCTCCACCGCTGTGGCTATGA 507 0.6607 MMASSSSSGSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPALCLDLNAPSSDHRWPNVPSRTLVLTEFLHTAVLKDIEPPQPLPPATTALRRPDAGVPLGGGVQVVESSPTASFLGLVRRGIPIDLNEPPPLWL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00076 168 CDD AP2 14 73 IPR001471 GO:0003700|GO:0006355
Vium3104g00076 168 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Vium3104g00076 168 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Vium3104g00076 168 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Vium3104g00076 168 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 87 - -
Vium3104g00076 168 FunFam Ethylene-responsive transcription factor 2 14 72 - -
Vium3104g00076 168 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
Vium3104g00076 168 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677
Vium3104g00076 168 Gene3D AP2/ERF domain 14 72 IPR036955 GO:0003700|GO:0006355
Vium3104g00076 168 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00076 Vium-Chr3104 485376 486276 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3104g00076 5 168 AP2-EREBP Transcription Factor Family AT1G28360 50.000 5.06e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium3104g00076 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00076 - - gmx:100798369 280.411