Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00075 ATGGCGCCCAGGGACAAGACCACTGCCGTTAAGGTTAACACTAACGCTAACGCCGCCGGAGTCAAGGAGGTGCATTTTCGGGGAGTCAGGAAGAGGCCGTGGGGAAGATACGCCGCCGAGATCAGAGATCCCGGCAAGAAGAGCCGCGTTTGGCTAGGCACCTTCGACACGGCGGAGGAGGCGGCGCGTGCCTACGACGCCGCTGCTCGGGAGTTTCGCGGCCCCAAGGCCAAGACCAATTTCCCTCCTCCGTCCGATAGTAATGTCAAGAACGCCAGCCCTAGCCAGAGCAGCACCGTCGAGTCTTCCAGTCGCGACCGCGATGTCGCCGCCGATTCCTCCCCTCTGGACCTCAACCTCGCCCCGGCCGCCGTCTCCGCTGCCCGCTTCCCCTTCCAGCACCAGTTCTCCGTTTTTCCGGCGGCGGCCAACCAGGTTATGTACTTCGACGCTGTCATACGCGCCGGTTTGGGCCGCCCGCGTGGGTTTGGATTTGGCTACAATCAGCATCCCGTTGTGGCGAGCGAGTTCCACGCGACGACCAGCGACTCGGACTCGTCCTCCGTGATCGATCTGAACCACAACGAAGGCGATGTGAAGGGGAGCGGTTCCAGAATTTTCGATCTCGACCTTAATAACCCTCCTCCACAGGAGATGGCCTGA 663 0.6169 MAPRDKTTAVKVNTNANAAGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPPPSDSNVKNASPSQSSTVESSSRDRDVAADSSPLDLNLAPAAVSAARFPFQHQFSVFPAAANQVMYFDAVIRAGLGRPRGFGFGYNQHPVVASEFHATTSDSDSSSVIDLNHNEGDVKGSGSRIFDLDLNNPPPQEMA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00075 220 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 188 - -
Vium3104g00075 220 MobiDBLite consensus disorder prediction 72 111 - -
Vium3104g00075 220 SUPERFAMILY DNA-binding domain 25 82 IPR016177 GO:0003677
Vium3104g00075 220 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Vium3104g00075 220 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Vium3104g00075 220 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Vium3104g00075 220 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Vium3104g00075 220 MobiDBLite consensus disorder prediction 81 104 - -
Vium3104g00075 220 MobiDBLite consensus disorder prediction 201 220 - -
Vium3104g00075 220 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Vium3104g00075 220 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Vium3104g00075 220 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Vium3104g00075 220 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00075 Vium-Chr3104 466567 467686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3104g00075 22 159 AP2-EREBP Transcription Factor Family AT5G44210 53.472 2.81e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium3104g00075 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00075 K09286 - gmx:100170742 338.961