Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00060 ATGGACTACTATGGGATTTTGGAAGTTGACAAGAATGCCTCAGATGAAGAATTGAAGAAAGCCTACAGAAAGCTTGCAATGAAATGGCACCCTGATAAGAACCCAACCAATAAAAAGGAGGCTGAGATTAGATTCAAACAGATATCTGAAGCCTACGAGGTTCTGAGCGATCCTCAGAAGAGAGAAATTTATGATAGGTATGGAGAAGGTGGGCTTAAAGGTGGAATACCAACACGGGATGAAGGTATGGCTTCCTTCTTCCGAACTGGGGATGGCCCACAACCATTTAGGTTCAATCCCAGAAATGCAAACAACATTTTTGCAGAAGTGTTTGGGAGTTCAACCCCATTTGGAGGAATGGGAATGGGAAGGGGGTTTGAGTGTGGTAGCAGAGGCAGAGGCATGGGCATGAGGGGGGGATCGTGGGTATCAAGATCCTTTGGCGGAATGTTTGGCAATGACATCTTCAGAGAAGGCAGGCCAATGAATGAAGCTCCACGCCGCAAGGCTCCTCCTATCCAAAATACACTGTTTTGCAGCCTTGAGGAACTCTACAAGGGCAGTACCAGAAAGATGAAAATCTCAAGGGAAGTTGCACTTGCAAGCGGGAGAGTTTTTCCTGTGGAGGAAATATTGAACATTGAAATCCAACCGGGATGGAAGAAGGGAACCAAAATCACTTTCCCAGAGAAAGGAAATGAGCAGCCAAATGTCATTGCAGCTGATCTTGTGTTTATAATTGATGAGAAACCTCACGGTATATTTACAAGAGTTGGTAATGATTTGGTTGTGACAAAAAAGATATCTCTTACGGAAGCTGAAGCTCTACCAGGTTACACCATCCAACTTACAACTCTTGATGGCAGGGATCTGAACATCGCCATAAACAACGCCACTGATCCAGATTACGAAGAAGTCGTCACCGGGGAAGGCATGCCAATTGCGAAAGATCCTTCAAAGAGGGGTAACCTTAGGATCAAATTCAACATCGAAATCCCAGATGTAGTCGGTGCCTGA 1017 0.4503 MDYYGILEVDKNASDEELKKAYRKLAMKWHPDKNPTNKKEAEIRFKQISEAYEVLSDPQKREIYDRYGEGGLKGGIPTRDEGMASFFRTGDGPQPFRFNPRNANNIFAEVFGSSTPFGGMGMGRGFECGSRGRGMGMRGGSWVSRSFGGMFGNDIFREGRPMNEAPRRKAPPIQNTLFCSLEELYKGSTRKMKISREVALASGRVFPVEEILNIEIQPGWKKGTKITFPEKGNEQPNVIAADLVFIIDEKPHGIFTRVGNDLVVTKKISLTEAEALPGYTIQLTTLDGRDLNIAINNATDPDYEEVVTGEGMPIAKDPSKRGNLRIKFNIEIPDVVGA 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00060 338 Pfam DnaJ C terminal domain 174 333 IPR002939 -
Vium3104g00060 338 PRINTS DnaJ domain signature 60 79 IPR001623 -
Vium3104g00060 338 PRINTS DnaJ domain signature 22 37 IPR001623 -
Vium3104g00060 338 PRINTS DnaJ domain signature 4 22 IPR001623 -
Vium3104g00060 338 PRINTS DnaJ domain signature 40 60 IPR001623 -
Vium3104g00060 338 FunFam Dnaj homolog subfamily b member 169 250 - -
Vium3104g00060 338 CDD DnaJ_C 171 334 - -
Vium3104g00060 338 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 334 - -
Vium3104g00060 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 255 335 IPR008971 GO:0006457|GO:0051082
Vium3104g00060 338 Gene3D DnaJ domain 1 121 IPR036869 -
Vium3104g00060 338 Gene3D - 252 334 - -
Vium3104g00060 338 SUPERFAMILY Chaperone J-domain 1 96 IPR036869 -
Vium3104g00060 338 SMART dnaj_3 1 60 IPR001623 -
Vium3104g00060 338 Pfam DnaJ domain 2 65 IPR001623 -
Vium3104g00060 338 CDD DnaJ 2 57 IPR001623 -
Vium3104g00060 338 ProSitePatterns Nt-dnaJ domain signature. 45 64 IPR018253 -
Vium3104g00060 338 FunFam DnaJ subfamily B member 13 1 121 - -
Vium3104g00060 338 Gene3D - 172 250 - -
Vium3104g00060 338 FunFam DnaJ subfamily B member 13 252 334 - -
Vium3104g00060 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 167 263 IPR008971 GO:0006457|GO:0051082
Vium3104g00060 338 ProSiteProfiles dnaJ domain profile. 2 68 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00060 Vium-Chr3104 375478 378333 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3104g00060 3 67 C2H2 Transcription Factor Family AT1G74250 39.130 3.51e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00060 K09510 - gmx:100804763 587.415