Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00059 ATGGAGGCGGAGCCAGAGAACAACGAGGTGAAGAGGGAAGAAAACAGCAATGACGACAACAACAACAACAATGAAAGTAACAGCAAATTTGGAAATTCTAGTGAGGGTCAGAGCAAGCCCAAGCGCCAGATGAAGACACCGTTTCAGCTTGAAACGCTCGAGAAAGCTTATGCTGTGGAGAATTACCCGTCCGAGATGATGAGAGCAGAGTTGTCTGAGAAGTTGGGGTTGTCGGATCGGCAGTTGCAGATGTGGTTCTGTCACCGGCGGTTGAAGGACAAGAAGGACTTGCCGTCGAAAAAGCTGCGTAAGGCTGCGGCGTTAACTGATTCTCCGGTTGAGGAGCCCAAGCTGGCTTCTGAAGTGGGTGCTGAATACGGATCCGGGTCGGGTTCAGGGTCCAGTCCGTTTACCCGTTCGGAGTTGAGGAATGTGGTGCCTAGGGGGTACTATGAGTCGCCACAGACTATAATGGAGCTTAGAGCAATTGCTTGTGTGGAGGCTCAGTTGGGGGAGCCTTTAAGAGAAGATGGACCTATTCTTGGAGTGGAGTTTGATCCGTTGCCGCCAGATGCATTTGGGGCACCCTTAGCTGTTACAGATCCTCAAAAGCGGCCTAGTCTTGCCTATGACAATAAAATGTATGAAAGACATGATGTTAGGACAAATAAGGCAATAGCAAGGACATTCCATGAATATCCCTTTCTTCCAAGCCAGTCTGGCATTAGATCTGATGTTTTTGGACAACTAAACCTGCCCCATTTACATGAACCGATGGAGGGTCCGGCAAGAACCCCTTTTCCCCTTGGAAATGAACAACCTAGAATTCATGCTCCTCAAAGTCATTCTGCTCGTGTTCGTCTTTTGTCTCAACCACAGGACAAACAAGTGATTCCCTATCCATCTCCCCCTCGAGAAAATGATGTTGTACCCAAAAGGGAACCTCACATAAACATAACAAATACTGGAATGAACTCCCACTATGCTACTGATCACCCAATTGTTGGACAAGAAATTCCATATGCTTTACCTGGTGGGCAAGTATCCCATAATGATGCAGTATTGAGGATGGAGAGGAAACGGAAGATTGATGAAGCCAGAGTTGCAAAGGAAGTTGAAGCCTATGAAATGAGGATGCGGAAAGAGCTTGAGAAACAAGATAACCTCAGACGAAAGAGTGAAGAGAGATTGAAGAAGGAAATGGAAAGGCAAGATCGTGAGAGAAAGAAGGAAGAAGAGAGGTTGTTGCGTGAGAAACAGCGAGAAGAGGAAAGATCAAAACGTGAGCAAAGGCGGGAAATGGAGCGAAGGGAAAAGTTTTTGTTGAAAGAACATTTGAGAGCTGAGAAAAGGAGGCAAAAAGAAGAGATCCGCAAAGAGAAAGAGGAAGAGAGGAGGAAAGCTGCACTTGAGAAGGCAAATGCTCGGAGAATAGCTAAAGAATCTATGGAGCTTATTGAGGATGAACAACTTGAATTGATGGAGTTGGCTGCTGCAAGCAAGGGGCTTTCCTCTATTATTCATATTGATCTTGATACTTTGCAGAACCTTGAATCATTTAGGGATTCATTGAGTGTATTCCCCCCCAAAAGTGTAAAGCTGAGAAAACCATTTGCTATCCAACCCTGGAGCAACTCAGAACAGAATGTTGGCAACCTTCTCATGGTTTGGAGATTCTTGATTACTTTTGCTGATGTTCTTGATTTATGGCCTTTTACTCTTGATGAGTTTGTACAGGCATTTCATGACTATGATTCTAGATTGTTGGGCGAGATACATGTTGCTCTTCTCAAGGTGATAATAAAGGACATTGAAGATGTTGCTAGGACACCTTCTACAGGATTGGGGATGAATCAGAACGGAGCTGCTAATCCTGGAGGTGGCCATCCAGAGATCGTGGAAGGAGCATATGCATGGGGCTTTGACATACGAAATTGGCAGAAGAACTTGAATCAGTTGACATGGCCAGAAATTTTCCGACAGTTAGCACTGTCTGCAGGATTAGGACCACACCTGAAGAAAAGAAGTATTGCATGGTCATACACAATTGATAAAGACGAGGGAAAAAGTTGTGTAGATATCATTTCTACACTTCGTAATGGTTCGGCAGCTGAAAGTGCCGTGGCCAAAATGCAAGAGAGAGGTCTATTAGCTCCCCGAAGATCAAGGCACCGGTTAACTCCTGGAACAGTTAAATTTGCAGCATTTCATGTTCTCTCATTGGAGGGTAGTAAGGGCTTGACAGTACTGGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTCCGAGACCTAACGACCAGCAAGACTCCTGAAGCATCAATTTCTGTTGCTTTGACAAGAGACACTAAATTGTTTGAAAGAATAGCTCCATCAACATACTGTGTACGAGATGCATTCAGAAAAGATCCTGCTGATGCTGACTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGGTGAAGATGCTGATGATGTTGAAAGAGAAGAGGAGTCAGAAAGTGATGAAGTCGATGAGGATCCTGAAGATGATGATTTAGTGAATCCTTTGAGTGCAAACCAAAATTCTGAACAGTATCCTGACACAAACATTTGCTCATCAAATGGAAAAGAAAATTTGGGTCACAACATAGATCTTATTCAAAATGAGTTTGATACAGATTTACCCTGTCTTCCTAAGAATGGTTCAACAAGTGCTGATTGTCCCAGTTCTGTCACCAGACCTGTTGCTTGTGGAGATTTAAATGCTGGCAATCTTGATCAAGATAATATGGAAATTGATGAAAGCATATCTGGAGAGTCCTGGATTCTTGGACTTGCAGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGCTTTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTGTTGTCCTTGAGGATCGACTGGAATCAGCAAATGCTCTGAAGAAACAAATGTGGGCAGATGCTCAGATTGACAAAGTTCGTCTGAAAGATGATAATATTAGTAAATTAGATTTTCCATCTCTTACTGGAAATAAAGTTGAAACACAATACACATATCCAGCTGCGGAGGGACACCAAAGCCCAATAATGCTTGACATTAATATTAATAATAATGAAGCATCACCCAGCACTGCAGAAAACCAAAAGGGAGCTCCTGTTGCGCTGAGCATGCCTATGGAGAAGTCCTCATCAATTCAAGATTTTGGCATTGGTACTGGTGCAGACATCCCACAGACTCAAGTACCTGCACAATATTCAAAAAGGTCACGTTCACAGTTGAAATCTTATTTTGCCCACCTAGCGGAGGAGATGTATGTCTACAGGTCTTTACCCCTTGGCCAAGATCGCAGACGTAATCGATATTGGCAGTTTGTTGCATCTGCTTCTAGCAGTGATCCTGGTTCTGGCAGGATCTTTGTTGAATGTCATGATGGCAGGTGGTGGCTCATTGATTCTGAAGAGGCCTTTGATTCTCTTTTGACATCATTGGATTCACGTGGGCTCAGGGAATCTCATTTGCGCTTAATGTTGCAAAGGATTGAGAATTCCTTTAAAGAAAATGTTCGTAAGAGGAATGCACATTATGCCAAAAATGGAAGCAGAGGCGAAGTTTCTATTAAAGTTGAAGCTAATGAACCATTTTCCATCCCTGACCACAATGCTGGATCTGACAGTCCTAGCAGTATCCTCTATGACTTGAACACTGATACATCTGAAGTTTCATCGTCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGTGAGAAGAAAGCTGCCTTGAGAAGGTATCATGATTTTCAGAAGTGGTTGTGGAAAGAATGCTATAATTCATCAGTTTTATGTGCAATGAAATATGGGATAAAGAGATGCAAACCTCAGATGGACATTTGTGATATCTGTCTCGATCTTTATTTTGATGAAGACTCCCATTGCAGTTCCTGCCACCGGACTTTTTCCTCAAATAATGGATTTAATTTTTCTAAGCATGCATTTCAATGTCGAGACAAATTATCCAAAGATAATTGTATTTTGGAATACTCTCTTCCCTTGCGGACAAGATTGCTTAAGATCCTGTTGGCTTGTATGGAGGTATCTGTTCTATCTGAAGCGTTTGGAACAAATTGGACCGATGATATTAGGAAGCACTGGGGTGTAAAGTTGAGCAAATCATCTTCTGTTGAGGAGCTTATACAGATATTGACCCTATTTGAGAAAGCACTACGGCGAGATTTTCTGTCATCTAACTTCTCTACAACAGATGAATTGTTGGGATCAAGCAGTATGTTAGAATGTTCTGGGCAGGCTTCAACTGATCCTGAATCTGTTCCTGTGCTTCCATGGGTTCCACTAACAACTGCAGCTTTGTCTCTCAGACTTTTTGAGATTGATTCATCCATCAGCTATGTAAAGCCCGAAAGACTTGAGCCTTCTGAGGAAAAAGAAGCAAGAGAATACATAAGGTTTCCATCAAGATATACTCACTTGAAATCTAATAGGGAGGTTGAACCAGCAGAATTCGACCATGATGAATTCGCTAAAGATAAATCTGTTCCTAAGAAAATTGTACGAAGTGGCAATAAACGTCGTCGAGGGAGTAATGAACAAAGACGGGGCAAAAAACTGGCTAAAAGAGTGTACAATTCCAAACGAGACGGTGGTCGGAAGAATGCTAAGGTCACTGTCAATCTAAGTCACAAATTAAAACAGCAGGCACGAGGAACACAAGGACAAGGTGCTGGGCGAGGTCGCCGAACTGTAAGAAAGCGGAGAGTGGGAAAGCGAGCTGTTGAAGATTTGTTGCTGGGCCATACAACAGCGAGCCATAGCTCCAAGATTGATAGAGAACCACTGAAAAACTTGGATGAGGAATGGGATGGAGAAAAGGCAAGTCCCATGACTCCGGTGCACATTGGGGTTGCTGCTGACCATAGTAATAGTGCTGAAGAGGTAGAATCTGATTATGACCACGCTCAAGCTGTGGAATATGATCAAGGAAACTGGGAGGTAGGTTTTAACGGTGTTCCCTCCAACAGGTGGAGTGGGGATTTGGTTGGAATGAGTGACGAAGATGTGGATGCTTCTGAAGACGACAATGACAATGGCATTGAAGAGAATGAAGATGAGGATTCAGAAGCGGATGTTATGAGTGAGGAGGGTTCAGATGGGATGGGAAATAGGGTAGTAAACGTTGGAGGCTCATACTCAGCTTTGTCCGAAGATTCTTCAGATTAG 5259 0.4309 MEAEPENNEVKREENSNDDNNNNNESNSKFGNSSEGQSKPKRQMKTPFQLETLEKAYAVENYPSEMMRAELSEKLGLSDRQLQMWFCHRRLKDKKDLPSKKLRKAAALTDSPVEEPKLASEVGAEYGSGSGSGSSPFTRSELRNVVPRGYYESPQTIMELRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPLAVTDPQKRPSLAYDNKMYERHDVRTNKAIARTFHEYPFLPSQSGIRSDVFGQLNLPHLHEPMEGPARTPFPLGNEQPRIHAPQSHSARVRLLSQPQDKQVIPYPSPPRENDVVPKREPHINITNTGMNSHYATDHPIVGQEIPYALPGGQVSHNDAVLRMERKRKIDEARVAKEVEAYEMRMRKELEKQDNLRRKSEERLKKEMERQDRERKKEEERLLREKQREEERSKREQRREMERREKFLLKEHLRAEKRRQKEEIRKEKEEERRKAALEKANARRIAKESMELIEDEQLELMELAAASKGLSSIIHIDLDTLQNLESFRDSLSVFPPKSVKLRKPFAIQPWSNSEQNVGNLLMVWRFLITFADVLDLWPFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGMNQNGAANPGGGHPEIVEGAYAWGFDIRNWQKNLNQLTWPEIFRQLALSAGLGPHLKKRSIAWSYTIDKDEGKSCVDIISTLRNGSAAESAVAKMQERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRDAFRKDPADADSILSEARKKIQIFENGFLAGEDADDVEREEESESDEVDEDPEDDDLVNPLSANQNSEQYPDTNICSSNGKENLGHNIDLIQNEFDTDLPCLPKNGSTSADCPSSVTRPVACGDLNAGNLDQDNMEIDESISGESWILGLAEGEYSDLSVEERLNALVALVGVANEGNSIRVVLEDRLESANALKKQMWADAQIDKVRLKDDNISKLDFPSLTGNKVETQYTYPAAEGHQSPIMLDININNNEASPSTAENQKGAPVALSMPMEKSSSIQDFGIGTGADIPQTQVPAQYSKRSRSQLKSYFAHLAEEMYVYRSLPLGQDRRRNRYWQFVASASSSDPGSGRIFVECHDGRWWLIDSEEAFDSLLTSLDSRGLRESHLRLMLQRIENSFKENVRKRNAHYAKNGSRGEVSIKVEANEPFSIPDHNAGSDSPSSILYDLNTDTSEVSSSFKIELGKSESEKKAALRRYHDFQKWLWKECYNSSVLCAMKYGIKRCKPQMDICDICLDLYFDEDSHCSSCHRTFSSNNGFNFSKHAFQCRDKLSKDNCILEYSLPLRTRLLKILLACMEVSVLSEAFGTNWTDDIRKHWGVKLSKSSSVEELIQILTLFEKALRRDFLSSNFSTTDELLGSSSMLECSGQASTDPESVPVLPWVPLTTAALSLRLFEIDSSISYVKPERLEPSEEKEAREYIRFPSRYTHLKSNREVEPAEFDHDEFAKDKSVPKKIVRSGNKRRRGSNEQRRGKKLAKRVYNSKRDGGRKNAKVTVNLSHKLKQQARGTQGQGAGRGRRTVRKRRVGKRAVEDLLLGHTTASHSSKIDREPLKNLDEEWDGEKASPMTPVHIGVAADHSNSAEEVESDYDHAQAVEYDQGNWEVGFNGVPSNRWSGDLVGMSDEDVDASEDDNDNGIEENEDEDSEADVMSEEGSDGMGNRVVNVGGSYSALSEDSSD 1752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00059 1752 MobiDBLite consensus disorder prediction 827 869 - -
Vium3104g00059 1752 CDD homeodomain 41 95 IPR001356 GO:0003677
Vium3104g00059 1752 MobiDBLite consensus disorder prediction 1 49 - -
Vium3104g00059 1752 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 938 981 IPR028942 -
Vium3104g00059 1752 MobiDBLite consensus disorder prediction 1697 1725 - -
Vium3104g00059 1752 Pfam HB1, ASXL, restriction endonuclease HTH domain 729 797 IPR007759 GO:0006355
Vium3104g00059 1752 MobiDBLite consensus disorder prediction 1 19 - -
Vium3104g00059 1752 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1118 1190 IPR028941 -
Vium3104g00059 1752 SMART testlast3 547 606 IPR018501 -
Vium3104g00059 1752 MobiDBLite consensus disorder prediction 1571 1585 - -
Vium3104g00059 1752 MobiDBLite consensus disorder prediction 1687 1752 - -
Vium3104g00059 1752 MobiDBLite consensus disorder prediction 855 869 - -
Vium3104g00059 1752 ProSiteProfiles HARE-type HTH domain profile. 729 798 IPR007759 GO:0006355
Vium3104g00059 1752 SMART HOX_1 38 100 IPR001356 GO:0003677
Vium3104g00059 1752 MobiDBLite consensus disorder prediction 1547 1565 - -
Vium3104g00059 1752 Coils Coil 372 478 - -
Vium3104g00059 1752 MobiDBLite consensus disorder prediction 1518 1540 - -
Vium3104g00059 1752 MobiDBLite consensus disorder prediction 1518 1599 - -
Vium3104g00059 1752 MobiDBLite consensus disorder prediction 20 45 - -
Vium3104g00059 1752 ProSiteProfiles DDT domain profile. 547 606 IPR018501 -
Vium3104g00059 1752 MobiDBLite consensus disorder prediction 386 433 - -
Vium3104g00059 1752 Gene3D - 22 97 - -
Vium3104g00059 1752 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 14 1752 IPR044977 GO:0006357
Vium3104g00059 1752 MobiDBLite consensus disorder prediction 830 853 - -
Vium3104g00059 1752 Pfam DDT domain 549 603 IPR018501 -
Vium3104g00059 1752 Pfam Homeodomain 39 95 IPR001356 GO:0003677
Vium3104g00059 1752 ProSiteProfiles 'Homeobox' domain profile. 36 96 IPR001356 GO:0003677
Vium3104g00059 1752 SUPERFAMILY Homeodomain-like 27 95 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00059 Vium-Chr3104 364099 375350 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3104g00059 32 1681 Homeobox Transcription Factor Family AT1G28420 48.660 0.0 1318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vium3104g00059 WSD 8.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00059 - - gmx:100777465 2860.09