Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00057 ATGTCCCTGCTTCCTCTGTTCTTCCTCTTCACCGTGCTTCTCCTCCAAAATCACTTTTTCATCTCTGCTCTCAACCAAGACGGTTTATATCTGTACCAGTGGAAGCAATCCCTCGACGACCCTGACTTGTCTCTGGCGTCCTGGAACAACCGCGACACCACCCCATGCAACTGGGCCGGCGTCACATGCGGCCCAAATAGCAGCGCCGTCACTTCACTCGACCTCTCCAACTTCAACGTTGCAGGCCCATTCTCCGCCAACTTCCTCTGCCGCCTCCCCAACCTCACCTCCATCATTCTCTTCAACAACTCCATCAACCAAACCCTCCCTCTCCAAATATCCCTCTGCACCCCTCTCCTCCACCTTGACCTTTCCCAGAACCTCCTCACCGGCACCCTCCCCCATACACTCCCCCTCCTCCCCAGCCTCCGCTACCTTGACCTCACCGGCAACAACTTCTCCGGCCCCGTTCCCCCCTCCTTTGGAACCTTCCAGAACCTCCAAACCCTCTCCCTCGTATTCAACCTCCTTGACGACGTCTTTCCGCCTTCTCTCTTCAATATCACCTCCCTTAAAACTCTCAACCTCTCCTATAACCCCTTCATCCCTTCCCCCATTCCTCACTCCATCGGCAACCTCACCAATCTAGAGACGCTCTGGCTCAGCGCTTGCAATCTCGTGGGCCCCATTCCCGACTCCGTCGGGAACCTCAAAAACCTTCGCGTCTTGGATTTGACCTTCAACAACCTCTATGGACCCATCCCTAGTTCGCTCACTCGCATCACCACTGTCAAGCAGATTGAGTTGTACAACAACTCGCTCTCCGGCGAATTGCCTAGAGGAATCTCCAACCTCACTTCGTTGCGGCTCTTTGATGTTTCCATGAACCATTTGAGTGGGAGCATTCCCGATGAGCTGTGTCGTCTGCCTCTCGAGAGTCTCAACCTCTATGAGAACGGTTTCACCGGGGAGTTGCCGCCCAGTATTGCTAACTCGCCCAACCTTTATGAGCTGAGGTTGTTCGGGAACAAACTCACCGGGTCATTGCCGGACAATTTAGGGAAGTCCGGTCCTTTGAGATGGCTTGACGTTTCCACCAACCGTTTCTTCGGTGGGATTCCGGCGAGCCTCTGTGATCACGGCGAGTTGGAGGAGATGTTGATGCTCGGGAACCAGTTCTCTGGGGAGATACCGGCGAGTTTGGGCTCGTGTCGGAGCTTGACGCGTGTGAGGTTGGGTACGAACCGGTTGTCCGGCGAGGTTCCGGCGGGTATGTGGGGCCTTCCGCATGTGTATTTGCTTGAACTGATGGGTAACTCGTTTAGTGGCTCGATTGCGAGGACCATTGGTGGGGCGAGGAATTTGTCGTCGTTGATTCTGACGAAGAACAATTTCTCTGGTGTGATCCCCGAGGAGATTGGGTGGTTGGAAAATCTTCAAGAGTTTTCTGGTGGTGATAACAGGCTCAGTGGGTCGTTGCCTGGGAGTATTGTGAATCTCGGGCAGCTTGGCACTCTTGATCTTCATAACAATATGTTATCCGGGGAGCTCCCCAAGGAGATTCAGTCGTGGAAGAAACTGAATGACTTGAATTTGGCTAATAATGCGATTGGTGGGGTGATTCCTGATGGAATAGGCAGTTTGGCTGTGTTGAATTTTCTTGATCTTTCCAACAATCAATTCTCGGGGAATGTTCCTACGGCATTGCAGAATTTGAAGCTCAATCAGCTCAATCTGTCTTATAATAGGCTTACTGGAAAGCTACCCCCACTGCTGGCCAAGGATATGTACAGGGCTAGTTTTATTGGCAATCCTGGCTTGTGCGAGGATTTCAAAGGTTTGTGTGATGGCAAAAATGGGGATAAGGGTAAGGGTTTTGTGTGGATTCTGCGAGCTATTTTTATAGTTGCCACTTTGGTGTTTGTCATCGGTGTTGTCTGGTTTTACTTAAGGTACAAGAATTTCAAGAATGCTGAGAGATCTGTTGATAAATCAAAGTGGACTTTGATGTCGTTTCATAAACTGGGTTTCAGCGAAGATGAGATCTTGAATTGCCTGGATGAAGATAATGTGATAGGAAGTGGGTCTTCCGGGAAGGTTTACAAGGTTGTGTTGACCAGCGGGGAAGTGGTTGCTGTGAAGAAGATATGGGGCGGCGTCAAGAAGGATATAGACAGCGGAGATGTGGAGAGGGGTCAATTTCATCAAGACAGTGCTTTTGACGCAGAGGTTGAAACTTTGGGCAAAATTAGGCACAAGAACATTGTCAAACTGTGGTGTTGCTGCACTACTAGGGATAGCAAGCTATTGGTTTATGAGTATATGCCGAATGGTAGCCTGGGTGATTTACTGCATAGCAATAAAGGAGGGTTGTTGGACTGGCCAACTAGGTATAAGATAGCTGTTGATGCTGCAGAAGGCCTCTCTTATTTGCATCACGACTGTGTTCCTTCAATTGTTCATAGAGATGTGAAATCTAATAACATCTTGTTGGATGGGGACTTCGGTGCAAGGGTGGCAGATTTTGGAGTAGCTAAGGTAGTTGATGCCACCGGGAAAGGAACTAAATCCATGTCTGTTATAGCTGGGTCTTGTGGATACATAGCACCAGAATATGCATACACACTCAGAGTTAATGAGAAGAGTGATATATATAGCTTTGGTGTTGTCGTACTTGAGTTGGTTACGGGAAGGAGACCCATTGACCCTGAATTTGGGGAAAAAGACTTGGTTATGTGGGCGTGCACCACCTTGGACCAGAAAGGCGTGGAGCATGTGATTGACTCGAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCCTCAACATTGGCCTCATGTGCACCAGTCCTCTTCCAATCAACCGGCCTGCGATGAGAAGAGTGGTGAAGATGTTACAAGAGGTGGGCATAGAGAACCTAACGAAACCAGCCAAGAAAGATGGAAAGTTGTCCCCATATTACTATGACGATGGGTCTGATCATGGAAGTCTTGCTTAG 3003 0.4935 MSLLPLFFLFTVLLLQNHFFISALNQDGLYLYQWKQSLDDPDLSLASWNNRDTTPCNWAGVTCGPNSSAVTSLDLSNFNVAGPFSANFLCRLPNLTSIILFNNSINQTLPLQISLCTPLLHLDLSQNLLTGTLPHTLPLLPSLRYLDLTGNNFSGPVPPSFGTFQNLQTLSLVFNLLDDVFPPSLFNITSLKTLNLSYNPFIPSPIPHSIGNLTNLETLWLSACNLVGPIPDSVGNLKNLRVLDLTFNNLYGPIPSSLTRITTVKQIELYNNSLSGELPRGISNLTSLRLFDVSMNHLSGSIPDELCRLPLESLNLYENGFTGELPPSIANSPNLYELRLFGNKLTGSLPDNLGKSGPLRWLDVSTNRFFGGIPASLCDHGELEEMLMLGNQFSGEIPASLGSCRSLTRVRLGTNRLSGEVPAGMWGLPHVYLLELMGNSFSGSIARTIGGARNLSSLILTKNNFSGVIPEEIGWLENLQEFSGGDNRLSGSLPGSIVNLGQLGTLDLHNNMLSGELPKEIQSWKKLNDLNLANNAIGGVIPDGIGSLAVLNFLDLSNNQFSGNVPTALQNLKLNQLNLSYNRLTGKLPPLLAKDMYRASFIGNPGLCEDFKGLCDGKNGDKGKGFVWILRAIFIVATLVFVIGVVWFYLRYKNFKNAERSVDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLTSGEVVAVKKIWGGVKKDIDSGDVERGQFHQDSAFDAEVETLGKIRHKNIVKLWCCCTTRDSKLLVYEYMPNGSLGDLLHSNKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPSIVHRDVKSNNILLDGDFGARVADFGVAKVVDATGKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVVLELVTGRRPIDPEFGEKDLVMWACTTLDQKGVEHVIDSRLDSCFKEEICKVLNIGLMCTSPLPINRPAMRRVVKMLQEVGIENLTKPAKKDGKLSPYYYDDGSDHGSLA 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00057 1000 SUPERFAMILY RNI-like 72 379 - -
Vium3104g00057 1000 Pfam Leucine rich repeat 526 584 IPR001611 GO:0005515
Vium3104g00057 1000 Pfam Leucine rich repeat 166 226 IPR001611 GO:0005515
Vium3104g00057 1000 Pfam Leucine rich repeat 93 153 IPR001611 GO:0005515
Vium3104g00057 1000 SUPERFAMILY L domain-like 311 608 - -
Vium3104g00057 1000 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 775 984 - -
Vium3104g00057 1000 Gene3D Transferase(Phosphotransferase) domain 1 775 985 - -
Vium3104g00057 1000 SMART serkin_6 686 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3104g00057 1000 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Vium3104g00057 1000 FunFam Receptor-like protein kinase HSL1 310 617 - -
Vium3104g00057 1000 Gene3D Phosphorylase Kinase; domain 1 670 774 - -
Vium3104g00057 1000 Gene3D Ribonuclease Inhibitor 247 311 IPR032675 -
Vium3104g00057 1000 Gene3D Ribonuclease Inhibitor 181 246 IPR032675 -
Vium3104g00057 1000 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Vium3104g00057 1000 SUPERFAMILY Protein kinase-like (PK-like) 681 968 IPR011009 -
Vium3104g00057 1000 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 284 424 - -
Vium3104g00057 1000 FunFam Leucine-rich receptor-like protein kinase family protein 206 304 - -
Vium3104g00057 1000 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 24 188 - -
Vium3104g00057 1000 Gene3D Ribonuclease Inhibitor 312 617 IPR032675 -
Vium3104g00057 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Vium3104g00057 1000 SMART LRR_typ_2 548 571 IPR003591 -
Vium3104g00057 1000 SMART LRR_typ_2 285 309 IPR003591 -
Vium3104g00057 1000 SMART LRR_typ_2 500 523 IPR003591 -
Vium3104g00057 1000 SMART LRR_typ_2 188 213 IPR003591 -
Vium3104g00057 1000 SMART LRR_typ_2 140 166 IPR003591 -
Vium3104g00057 1000 SMART LRR_typ_2 237 261 IPR003591 -
Vium3104g00057 1000 SMART LRR_typ_2 92 116 IPR003591 -
Vium3104g00057 1000 FunFam Receptor-like protein kinase HSL1 670 774 - -
Vium3104g00057 1000 ProSiteProfiles Protein kinase domain profile. 686 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3104g00057 1000 Pfam Protein kinase domain 688 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3104g00057 1000 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00057 Vium-Chr3104 343337 347836 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3104g00057 21 1000 Receptor kinase-like Gene Family AT1G28440 67.850 0.0 1355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium3104g00057 Pkinase 4.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00057 - - gmx:100776936 1759.19