Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00055 ATGAACGCTGCGGAGCATATCGCTTATGACACGGTCATGATCACTCTATCCGTATCTCTCATCGTTCTTGCCATCATCCTCTTCCTGGCTTGCAAGAAGAAACCCGTTGAATCCGAAGAAACACTTCCCGTGAAGTTGTGTGCTCGTGCATACCCCTTGACGGAAGTTGATGCCGCCACCGACGGCTTCAACCACAGGAGAATCATCGGGCAGGGTCGCTTGGGAACCGTGTATGCGGGTACACTGGAGAAAGAAGAGCTGGTAGCCGTTAAAAGGATTCACCCCGTTCTCGTGTTGAGCAATGCAGGTTTTGGTTTCTCATCCGTGTTGAAATGGCTCTCCTTGGCTCAACACCCGAACGTAGTTCCGATCATAGGGTTCTCAGAAGCACCGGGTGAGAGAGTTATTCTGATGGAGTTTGTGCACATGGCGAGCTTGGACTTCTACTTGCATAAAAACCAAGACGGGGCTTCACTTTTGGATTGGAACAAGAGGATCAGAATTGCAGCAGGAACAGCGAGAGGGCTTCAGTATTTGCATGAAGTGGCAACACCAAACATCGTACACGGGCGAGTCAAGTCTTCAAATGTTTTAATTGATGTCAACTTTTGTCCTAGGATTTGTGATTATGGTCTTAACTTTTTGGCACCTGTGGAAAAGAGAGGAGTGGTGGGGTATGTGGATGATGAATATTGGAGTGAAAGAAGGGGTGGTGGAGCTACCAAAGAGAGTGATGTTTATGGTTTAGGAGTAGTCCTGCTGGAGCTTTTAACTGGGAAAGGGTGTGAGGGAGGGTTGTTGGTGAAGTGGGCATTGCCTTTAATTAGAGAAACAAGTTTTAGTGAACTTTTAGATCCTAGGTTGGTGATTCCTTCTGACACCAAGCCTCTGGTTAGATTAGCCAAAGTTGCTTCAGCATGTGTCGGTAACTCACGGAAATGTAGGCCTTCTGTCGCTCAAGTGGCTACCATTTTGAACAATTTAGAGACTGAAGTCTGCCTCTGA 1005 0.4726 MNAAEHIAYDTVMITLSVSLIVLAIILFLACKKKPVESEETLPVKLCARAYPLTEVDAATDGFNHRRIIGQGRLGTVYAGTLEKEELVAVKRIHPVLVLSNAGFGFSSVLKWLSLAQHPNVVPIIGFSEAPGERVILMEFVHMASLDFYLHKNQDGASLLDWNKRIRIAAGTARGLQYLHEVATPNIVHGRVKSSNVLIDVNFCPRICDYGLNFLAPVEKRGVVGYVDDEYWSERRGGGATKESDVYGLGVVLLELLTGKGCEGGLLVKWALPLIRETSFSELLDPRLVIPSDTKPLVRLAKVASACVGNSRKCRPSVAQVATILNNLETEVCL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00055 334 PANTHER OS01G0253100 PROTEIN 46 329 - -
Vium3104g00055 334 ProSiteProfiles Protein kinase domain profile. 63 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3104g00055 334 SUPERFAMILY Protein kinase-like (PK-like) 40 325 IPR011009 -
Vium3104g00055 334 FunFam serine/threonine-protein kinase-like protein ACR4 30 140 - -
Vium3104g00055 334 Pfam Protein tyrosine and serine/threonine kinase 66 323 IPR001245 GO:0004672|GO:0006468
Vium3104g00055 334 Gene3D Phosphorylase Kinase; domain 1 28 140 - -
Vium3104g00055 334 PIRSF ILK 29 333 - -
Vium3104g00055 334 Gene3D Transferase(Phosphotransferase) domain 1 142 332 - -
Vium3104g00055 334 FunFam Receptor protein kinase CRINKLY4 141 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00055 Vium-Chr3104 334178 335975 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3104g00055 48 325 Receptor kinase-like Gene Family AT3G59420 39.041 2.51e-54 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vium3104g00055 PK_Tyr_Ser-Thr 3.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00055 - - var:108342329 634.409