Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00053 ATGACATGGTGTAATGACTCTGATGAGGAGAAGAGGATTGAATCAATGATTGTTACTCAAAAGACCAGTGTCACTGACATAAAACTCCACGAAGAAATTCGAACTGTAACATGCCCCTCCTGCGGCCATAACATTGAATTCAAAGATCAGGGTGGAATTCATGACTTGCCGGGGTTACCAGCTGGAGTGAAATTTGACCCAAATGACCAAGAAATACTAGAGCATTTAGAGGCAAAAGTGGGATCGGATGCATGCAAGCTTCATCCCCTTATTGATGAGTTCATACCAACTCTTGAAGGCGAGAATGGGATTTGTTCTACACACCCAGAAAAACTACCAGGAGTGGGCAAAGATGGACAGATCCGCCACTTCTTTCACAGGCCATCAAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCACACAGATGAAGAAGGAAGTGAAACAAGATGGCACAAAACGGGAAAAACTAGAGCTGTTTTTGCAGCTTGTGGTGCTGTGAAGGGCTTTAAAAAAATACTAGTACTCTACACCAACTATGGCAGGAAAAGGAAGCCTGAGAAGACTAATTGGGTGATGCATCAATATCATCTTGGCAGCACTGAAGAAGAGAAAGATGGAGAATTAGTTGTTTCAAAGATCTTCTATCAGACACAACCCAGACAATCCGGTAATAATCCCAATATCATAGAGGAGCCGTACGAGAAAATGTTGAATGCTGATTTTAGGGGTCACAACAACAATACATCAATACCTAAAACTACAACTATGGTGGATTGCTACAATGTTCCTTACATAAATTATGATGATGTCCATTCACAACTAATTATTCCCAGCTCGGTTGTTGCAGCTGATGACTCTTACATTCGCTATGCAATGGATGCAAAGAAAGCAAGATTTGAAACTAACACTGGGAAGAGTTTCTAG 933 0.4116 MTWCNDSDEEKRIESMIVTQKTSVTDIKLHEEIRTVTCPSCGHNIEFKDQGGIHDLPGLPAGVKFDPNDQEILEHLEAKVGSDACKLHPLIDEFIPTLEGENGICSTHPEKLPGVGKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRAVFAACGAVKGFKKILVLYTNYGRKRKPEKTNWVMHQYHLGSTEEEKDGELVVSKIFYQTQPRQSGNNPNIIEEPYEKMLNADFRGHNNNTSIPKTTTMVDCYNVPYINYDDVHSQLIIPSSVVAADDSYIRYAMDAKKARFETNTGKSF 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00053 310 MobiDBLite consensus disorder prediction 138 153 - -
Vium3104g00053 310 Gene3D NAC domain 68 223 IPR036093 GO:0003677|GO:0006355
Vium3104g00053 310 MobiDBLite consensus disorder prediction 132 153 - -
Vium3104g00053 310 ProSiteProfiles NAC domain profile. 59 219 IPR003441 GO:0003677|GO:0006355
Vium3104g00053 310 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 19 249 IPR044799 GO:0003700
Vium3104g00053 310 Pfam No apical meristem (NAM) protein 60 200 IPR003441 GO:0003677|GO:0006355
Vium3104g00053 310 FunFam NAC domain-containing protein 73 68 223 - -
Vium3104g00053 310 SUPERFAMILY NAC domain 53 219 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00053 Vium-Chr3104 312155 315788 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3104g00053 1 228 NAC Transcription Factor Family AT4G28500 70.742 1.32e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium3104g00053 NAM 5.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00053 - - gmx:100809389 513.457