Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00052 ATGGAATTCAAATATCAGGGTGGAATTCATGACTTGCCGGGGTTACCAGCTGGAGTGAAATTTGACCCAAATGACCAAGAAATACTAGAGCATTTAGAGGCAAAAGTGGGATCGGATGCATGCAAGCTTCATCCCCTTATTGATGAGTTCATACCAACTCTTGAAGGCGAGAATGGGATTTGTTCTACACACCCAGAAAAACTACCAGGAGTGGGCAAAGATGGACAGATCCGCCACTTCTTTCACAGGCCATCAAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCACACAGATGAAGAAGGAAGTGAAACAAGATGGCACAAAACGGGAAAAACTAGAGCTGTTTTTGCAGCTTGTGGTGCTGTGAAGGGCTTTAAAAAAATACTAGTACTCTACACCAACTATGGCAGGAAAAGGAAGCCTGAGAAGACTAATTGGGTGATGCATCAATATCATCTTGGCAGCACTGAAGAAGAGAAAGATGGAGAATTAGTTGTTTCAAAGATCTTCTATCAGACACAACCCAGACAATCCGGTAATAATCCCAATATCATAGAGGAGCCGTACGAGAAAATGTTGAATGCTGATTTTAGGGGTCACAACAACAATACATCAATACCTAAAACTACAACTATGGTGGATTGCTACAATGTTCCTTACATAAATTATGATGATGTCCATTCACAACTAATTATTCCCAGCTCGGTTGTTGCAGCTGATGACTCTTACATTCGCTATGCAATGGATGCAAAGAAAGCAAGATTTGAAACTAACACTGGGAAGAGTTTCTAG 801 0.4095 MEFKYQGGIHDLPGLPAGVKFDPNDQEILEHLEAKVGSDACKLHPLIDEFIPTLEGENGICSTHPEKLPGVGKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRAVFAACGAVKGFKKILVLYTNYGRKRKPEKTNWVMHQYHLGSTEEEKDGELVVSKIFYQTQPRQSGNNPNIIEEPYEKMLNADFRGHNNNTSIPKTTTMVDCYNVPYINYDDVHSQLIIPSSVVAADDSYIRYAMDAKKARFETNTGKSF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00052 266 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 9 205 IPR044799 GO:0003700
Vium3104g00052 266 FunFam NAC domain-containing protein 73 24 179 - -
Vium3104g00052 266 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Vium3104g00052 266 SUPERFAMILY NAC domain 10 175 IPR036093 GO:0003677|GO:0006355
Vium3104g00052 266 Gene3D NAC domain 24 179 IPR036093 GO:0003677|GO:0006355
Vium3104g00052 266 MobiDBLite consensus disorder prediction 88 109 - -
Vium3104g00052 266 MobiDBLite consensus disorder prediction 94 109 - -
Vium3104g00052 266 Pfam No apical meristem (NAM) protein 16 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00052 Vium-Chr3104 312153 326587 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3104g00052 7 183 NAC Transcription Factor Family AT1G28470 82.486 1.01e-105 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium3104g00052 NAM 3.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00052 - - gmx:100809389 451.055