Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00051 ATGGAATTCAAATATCAGGGTGGAATTCATGACTGGCCGATGTTACCTGCTGGAGTGAAATTTGACCCAAGTGACCAAGAAATACTAGAGTATTTAGAGGCTAAAGTGGGGTCTGATGCTGGCAAGCTTCATCCCCTTATTGATGAGTTCATACCAACTATTGAAGGCGAGAATGGGATTTGGTCTACGCACCCAGAAAAACTACCAGGAGTGGGCAAAGATGGACAGATCCGCCACTTCTTTCACAGGCCATCAAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCACACAGATGAAGAAGGAAGTGAAACAAGATGGCACAAAACGGGAAAAACTAGAGCTGTTTTTGCAGCTTGTGGTGCTGTGAAGGGCTTTAAAAAAATACTAGTACTCTACACCAACTATGGCAGGAAAAGGAAGCCTGAGAAGACTAATTGGGTGATGCATCAATATCATCTTGGCAGCACTGAAGAAGAGAAAGATGGAGAATTAGTTGTTTCAAAGATCTTCTATCAGACACAACCCAGACAATCCGGTAATAATCCCAATATCATAGAGGAGCCGTACGAGAAAATGTTGAATGCTGATTTTAGGGGTCACAACAACAATACATCAATACCTAAAACTACAACTATGGTGGATTGCTACAATGTTCCTTACATAAATTATGATGATGTCCATTCACAACTAATTATTCCCAGCTCGGTTGTTGCAGCTGATGACTCTTACATTCGCTATGCAATGGATGCAAAGAAAGCAAGATTTGAAACTAACACTGGGAAGAGTTTCTAG 801 0.4107 MEFKYQGGIHDWPMLPAGVKFDPSDQEILEYLEAKVGSDAGKLHPLIDEFIPTIEGENGIWSTHPEKLPGVGKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRAVFAACGAVKGFKKILVLYTNYGRKRKPEKTNWVMHQYHLGSTEEEKDGELVVSKIFYQTQPRQSGNNPNIIEEPYEKMLNADFRGHNNNTSIPKTTTMVDCYNVPYINYDDVHSQLIIPSSVVAADDSYIRYAMDAKKARFETNTGKSF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00051 266 Gene3D NAC domain 24 179 IPR036093 GO:0003677|GO:0006355
Vium3104g00051 266 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 9 205 IPR044799 GO:0003700
Vium3104g00051 266 FunFam NAC domain-containing protein 73 24 179 - -
Vium3104g00051 266 SUPERFAMILY NAC domain 9 175 IPR036093 GO:0003677|GO:0006355
Vium3104g00051 266 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Vium3104g00051 266 Pfam No apical meristem (NAM) protein 16 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00051 Vium-Chr3104 312146 326592 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3104g00051 7 183 NAC Transcription Factor Family AT1G28470 80.791 6.68e-103 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium3104g00051 NAM 7.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00051 - - gmx:100809389 431.409