Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00047 ATGGGGTTGATCGATCTGAACACCACCGAGGATGATGAAGCTCCATTATCCGCTTCTTCTTCTTCTGCCGCTTCATCTTCTTCTTCTCACTCCGGGATAAGCACTTCTGCTTCCACCTTGGTTGGTCCTCCTCCTCCTCCTACTCCGCCTCCTCCTCCTTCTTCCGTCTGCTTGGAACTGTGGCACGCATGTGCCGGACCTTTGATCTCTCTGCCGAAGAAAGGAAGTGTTGTTGTGTACTTGCCACAGGGACACTTTGAGCATGTTCAGGATTTTCCGGTCACTGCTTATGATATCCCCGCCCATGTCTTCTGTCGTGTTCTTGATGTCAAGCTCCATGCGGAGGAAGGGAGCGATGAAGTATATTGCCAAGTGTTGTTGGTTCCTGAAAGTGAGCAAGTGGAGCAAAGGTTGCGTGAAGGCCAAATTGAAGCTGATGGGGAAGAGGAGGACACTGAAGCAATGGTGAAGTCAACAACTCCCCATATGTTCTGCAAGACTCTCACAGCTTCAGACACTAGCACTCATGGTGGATTTTCAGTGCCTCGCCGAGCAGCTGAAGATTGCTTTCCTCCTCTGGATTACAGTCAACAGAGACCTTCACAGGAGCTCGTGGCTAAGGATCTTCATGGCCTGGAGTGGAGGTTTCGTCATATATACAGAGGCCAGCCACGGAGGCATTTGCTAACTACTGGATGGAGTGCATTTGTGAACAAAAAGAAGCTTGTTTCTGGAGATGCTGTGTTATTTCTTAGGGGCGACGATGGAGAACTGAGATTAGGGATTCGTAGGGCAGCCCAGTTGAAAGGTTCTGGTTCCTTTGCAGTACCTACTGGTCAGCAATTGAATCCTGGAACTTTCATGGATGTTGTTAATGCATTATCTACAAGATGTGCTTTTAGTGTTTGCTACAATCCAAGGTTTAGCTCTTCAGAATTCATCATACCTGTTCACAAATTCTTAAAGAGTCTTGATTGTTCTTATTTAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACAGAAGATGCTGCAGAACGGAGGTTTACTGGATTAATTGCTGGAATCAGTGATGTCGATCCAGTTAGATGGCCTGGATCGAAATGGAGATGCCTACTGGTAAGGTGGGATGACATGGAAGCTGCTAGGCACAATAGGGTTTCCCCATGGGAAATTGAGCCATGTGGTTCTGCTTCAAGTTCCAGCAACATGATGGCAGCTGGTTTGAAGAGGACCAGGATTGGAATGACTTCAACGAAGATGGAATTTCCTTCTCCCAATGGGATTGGAACATCAGACTTTGGGGAATCATTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATCCTCCCTTTGATGGTATTAATGCTCAGAGTCCCCGGTTATATGACTTAGGGAGGTACTATATTGGTCCAAACTGTCCCGGGATTCCCCCAACGGGAAATAACATCAGAATGCAGCATGCAGCATCTGATTTTTCCTGCAATGGCACAGGCTTTAGTGAATCTTTCCGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTCTTCCAAGTCAACCATATGGAAGAGCATTGTCAATAGAGGAGGCTCGAGCTAATGGTCGCTTGGGACATTTTGATGGTTATCAGTTGCTTAACTCCAGAAATGGGTGGTCTGTACAGATGCATGACAATGCTCCGCATTTGCATGCATCCGTTACACCTTCACAGGTGTCATCTCCATCATCTGTGTTAATGTTCCAGCAAGCAGTTAATCCAGTTTCTAACAGTGATTATAATAATAAGAAACATAGTAAGATGTACCAAGGTTTATGCGCATCTGAAGTGAAAGCTAGAACATTTGCATCTCCCCCATCTGATGATCTTACTTTCTCCAGGCGAGCTCCGGAAAGGGCTAGTTCTTTAGGTATGTTTGATGTTCGTAATCAGTTGGGTAGTTCACAGTCACACAATTCTGTGTCGGCCCTGAGAAACAATCAAGAGTTGGTTTCCTCATGTAAAAGTAGTTGTAGACTCTTTGGTTTTTCATTGACTGAGGACACACATGTTGCAACCAAAGAGGTCGATGCCTCTACCATCACTTTACCAATTAATGCTGGACCTTCCTTTACTAGAATTGTTGAAGATGAGTTTCATCCTAGCAGGACACTTCAGAGCAAGGCGGTTGGAAGTAACTGCACAAAGGGTGTGTTGCAGTATTGA 2211 0.4559 MGLIDLNTTEDDEAPLSASSSSAASSSSSHSGISTSASTLVGPPPPPTPPPPPSSVCLELWHACAGPLISLPKKGSVVVYLPQGHFEHVQDFPVTAYDIPAHVFCRVLDVKLHAEEGSDEVYCQVLLVPESEQVEQRLREGQIEADGEEEDTEAMVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKGSGSFAVPTGQQLNPGTFMDVVNALSTRCAFSVCYNPRFSSSEFIIPVHKFLKSLDCSYLVGMRFRMRFETEDAAERRFTGLIAGISDVDPVRWPGSKWRCLLVRWDDMEAARHNRVSPWEIEPCGSASSSSNMMAAGLKRTRIGMTSTKMEFPSPNGIGTSDFGESLRFRKVLQGQEILGVNPPFDGINAQSPRLYDLGRYYIGPNCPGIPPTGNNIRMQHAASDFSCNGTGFSESFRFQKVLQGQEILPSQPYGRALSIEEARANGRLGHFDGYQLLNSRNGWSVQMHDNAPHLHASVTPSQVSSPSSVLMFQQAVNPVSNSDYNNKKHSKMYQGLCASEVKARTFASPPSDDLTFSRRAPERASSLGMFDVRNQLGSSQSHNSVSALRNNQELVSSCKSSCRLFGFSLTEDTHVATKEVDASTITLPINAGPSFTRIVEDEFHPSRTLQSKAVGSNCTKGVLQY 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00047 736 SUPERFAMILY DNA-binding pseudobarrel domain 157 271 IPR015300 -
Vium3104g00047 736 MobiDBLite consensus disorder prediction 1 54 - -
Vium3104g00047 736 Gene3D - 328 401 - -
Vium3104g00047 736 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Vium3104g00047 736 CDD B3_DNA 162 264 IPR003340 GO:0003677
Vium3104g00047 736 FunFam Auxin response factor 162 266 - -
Vium3104g00047 736 Pfam Auxin response factor 291 371 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium3104g00047 736 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Vium3104g00047 736 Coils Coil 131 151 - -
Vium3104g00047 736 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 55 687 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium3104g00047 736 FunFam Auxin response factor 327 398 - -
Vium3104g00047 736 MobiDBLite consensus disorder prediction 12 39 - -
Vium3104g00047 736 Gene3D - 162 266 IPR015300 -
Vium3104g00047 736 SMART B3_2 164 266 IPR003340 GO:0003677
Vium3104g00047 736 MobiDBLite consensus disorder prediction 40 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00047 Vium-Chr3104 275045 281210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3104g00047 163 521 B3 DNA Binding Superfamily AT2G33860 60.000 7.27e-146 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium3104g00047 B3 3.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00047 K14486 - gmx:100789906 1243.41