Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00043 ATGGATGTTGAAGAGTTGTTTCAGGCTCAGACTCATTTATACAAGTATACTTACAGTTTCGTTGCTTCCATGTGCCTCAAAAGTGCAGTTAACTTGGGAATACCAGACGCAATCTTCAAGAATGGCAAACCTATTACTCTCTCTGAGTTGGTCTTGGCACTTCAGATTCAACCAACAAAATCTGGTCATGTATATAGACTCATGCGCTTGCTGGTGCATGCTGGCTTCTTTGCAACAACCAAGGTTGTGAAAGATGATAAAGAAGAAGTGGGGTATGATCTCACACCTTCTTCAAGGCTACTCCTTAAAGACAACGTTCCAACCTTGTCTCCTTTTGTTCGAGCAATGTTTCATCCAGCTATAGTTCACTCATCAGAATCATTGCCAGAGTGGTTTCACAGAAACGAGACCACACCCTGTGACACTGCGTTTGGGATGAGTTTCTGGGAGTATTTGAGTCAAAACCAAGAGTTTAACGGCCTCTTCAATGAAGCAATGGTCAGTGATTCCGGGATGGTGAATTTGGTTATGAAAAACTGTAAATCTGTTTTTGAGGGACTGAATTCCTTGGTTGATGTTGGTGGCGGTAAAGGAGGTGTGGGTAGGATCGTTTGTGAGTCACTGCCTAATTTGCAATGGACCGTGCTTGATCTTCCACATGTTGTTGAAAATTTGCCTGACAGTACCAATTTGAAGTTTGTTGGAGGTGACATGTTTCAGTCCATTCCTCCAGCAGATGCGGTTCTTCTCAAGTTAGTGTTGCATGCTTATAGTGATGAAGAATGCATTAAGGTACTGAAGAAATGCAAAGAAGCTGTTTCAAAGAAGGGGAAGACAGGGAAAGTAATTATCATAGACATAGTAGTTGGTCAAAAGAATGAAAATCATGAATTAACAGAAGCAAAGCTGTTTTTTGATATGATTACGATGGTTGTGGTCACGGGGAGAGAGAGAGAAGAAAAAGAATGGGAGAAACTCTTCTTGGAAGCTGGATTCAGTCATTACAAGATAACAAACATCTTTGGTATGAGATCACTCATTGAAGTTTATCCTTGA 1056 0.41 MDVEELFQAQTHLYKYTYSFVASMCLKSAVNLGIPDAIFKNGKPITLSELVLALQIQPTKSGHVYRLMRLLVHAGFFATTKVVKDDKEEVGYDLTPSSRLLLKDNVPTLSPFVRAMFHPAIVHSSESLPEWFHRNETTPCDTAFGMSFWEYLSQNQEFNGLFNEAMVSDSGMVNLVMKNCKSVFEGLNSLVDVGGGKGGVGRIVCESLPNLQWTVLDLPHVVENLPDSTNLKFVGGDMFQSIPPADAVLLKLVLHAYSDEECIKVLKKCKEAVSKKGKTGKVIIIDIVVGQKNENHELTEAKLFFDMITMVVVTGREREEKEWEKLFLEAGFSHYKITNIFGMRSLIEVYP 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00043 351 Gene3D - 1 101 IPR036388 -
Vium3104g00043 351 Gene3D Vaccinia Virus protein VP39 102 351 IPR029063 -
Vium3104g00043 351 Pfam O-methyltransferase domain 131 333 IPR001077 GO:0008171
Vium3104g00043 351 Pfam Dimerisation domain 24 72 IPR012967 GO:0046983
Vium3104g00043 351 SUPERFAMILY "Winged helix" DNA-binding domain 4 105 IPR036390 -
Vium3104g00043 351 PIRSF O-mtase 1 351 IPR016461 GO:0008168
Vium3104g00043 351 PANTHER O-METHYLTRANSFERASE 6 336 IPR016461 GO:0008168
Vium3104g00043 351 FunFam Coniferyl alcohol 9-O-methyltransferase 1 101 - -
Vium3104g00043 351 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 350 IPR029063 -
Vium3104g00043 351 FunFam O-methyltransferase ZRP4 103 351 - -
Vium3104g00043 351 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 14 351 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00043 Vium-Chr3104 244558 245941 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3104g00043 21 349 Monolignol Biosynthesis Gene Families AT5G54160 32.249 2.47e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00043 K22588 - qsa:O6P43_012698 478.018