Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00042 ATGGATGTTGAAGAGTTGTTTCAGGCTCAGACTCATTTATACAAGTATACTTACAGTTTCGTTGCTTCCATGTGCCTCAAAAGTGCAGTTAACTTGGGAATACCAGACGCAATCTTCAAGAATGGCAAACCTATTACTCTCTCTGAGTTGGTCTTGGCACTTCAGATTCAACCAACAAAATCTGGTCATGTATATAGACTCATGCGCTTGCTGGTGCATGCTGGCTTCTTTGCAACAACCAAGGTTGTGAAAGATGATAAAGAAGAAGTGGGGTATGATCTCACACCTTCTTCAAGGCTACTCCTTAAAGACAACGTTCCAACCTTGTCTCCTTTTGTTCGAGCAATGTTTCATCCAGCTATAGTTCACTCATCAGAATCATTGCCAGAGTGGTTTCACAGAAACGAGACCACACCCTGTGACACTGCGTTTGGGATGAGTTTCTGGGAGTATTTGAGTCAAAACCAAGAGTTTAACGGCCTCTTCAATGAAGCAATGGTCAGTGATTCCGGGATGGTGAATTTGGTTATGAAAAACTGTAAATCTGTTTTTGAGGGACTGAATTCCTTGGTTGATGTTGGTGGCGGTAAAGGAGGTGTGGGTAGGATCGTTTGTGAGTCACTGCCTAATTTGCAATGGACCGTGCTTGATCTTCCACATGTTGTTGAAAATTTGCCTGACAGTACCAATTTGAAGTTTGTTGGAGGTGACATGTTTCAGTCCATTCCTCCAGCAGATGCGGTTCTTCTCAAGGTACTGAAGAAATGCAAAGAAGCTGTTTCAAAGAAGGGGAAGACAGGGAAAGTAATTATCATAGACATAGTAGTTGGTCAAAAGAATGAAAATCATGAATTAACAGAAGCAAAGCTGTTTTTTGATATGATTACGATGGTTGTGGTCACGGGGAGAGAGAGAGAAGAAAAAGAATGGGAGAAACTCTTCTTGGAAGCTGGATTCAGTCATTACAAGATAACAAACATCTTTGGTATGAGATCACTCATTGAAGTTTATCCTTGA 1017 0.413 MDVEELFQAQTHLYKYTYSFVASMCLKSAVNLGIPDAIFKNGKPITLSELVLALQIQPTKSGHVYRLMRLLVHAGFFATTKVVKDDKEEVGYDLTPSSRLLLKDNVPTLSPFVRAMFHPAIVHSSESLPEWFHRNETTPCDTAFGMSFWEYLSQNQEFNGLFNEAMVSDSGMVNLVMKNCKSVFEGLNSLVDVGGGKGGVGRIVCESLPNLQWTVLDLPHVVENLPDSTNLKFVGGDMFQSIPPADAVLLKVLKKCKEAVSKKGKTGKVIIIDIVVGQKNENHELTEAKLFFDMITMVVVTGREREEKEWEKLFLEAGFSHYKITNIFGMRSLIEVYP 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00042 338 Pfam Dimerisation domain 24 72 IPR012967 GO:0046983
Vium3104g00042 338 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 14 338 IPR016461 GO:0008168
Vium3104g00042 338 FunFam Coniferyl alcohol 9-O-methyltransferase 1 101 - -
Vium3104g00042 338 Gene3D - 1 101 IPR036388 -
Vium3104g00042 338 FunFam O-methyltransferase ZRP4 103 338 - -
Vium3104g00042 338 PANTHER O-METHYLTRANSFERASE 6 323 IPR016461 GO:0008168
Vium3104g00042 338 PIRSF O-mtase 1 338 IPR016461 GO:0008168
Vium3104g00042 338 SUPERFAMILY "Winged helix" DNA-binding domain 4 105 IPR036390 -
Vium3104g00042 338 Gene3D Vaccinia Virus protein VP39 102 338 IPR029063 -
Vium3104g00042 338 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 337 IPR029063 -
Vium3104g00042 338 Pfam O-methyltransferase domain 131 320 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00042 Vium-Chr3104 244554 245941 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3104g00042 21 336 Monolignol Biosynthesis Gene Families AT5G54160 30.473 4.10e-38 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00042 K22588 - qsa:O6P43_012698 446.817