Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00028 ATGGACCAACGGCATAAAGTGATTCTTCTTCAGCTGCTTCTTTTCCAAGTTCTGCTTGTTGCATCGCAGACAGACAGTCGAGATTATTCTGCACTAAATTCCCTTGCACAATCCTGGAGTAACAAGCCACAAAGTTGGGTGGGTCAAGATCCTTGCAGTGGCTGGGATGGAATTCGTTGCAGCAATACAAGAATTACCCAATTGAGAGTTCCAGGCTTGAATATCGGTGGCCAACTGTCTTCGGCAATTGAGTCTTTATCCGAACTAGATACTCTGGATCTTTCTTACAACACGCGTTTGACGGGAACAATTCCAGAAGCAATTGGAAATATGAAAAACCTAAAATCCCTATCATTGGTTGGTTGTGGTTTCTCTGGTCCGATTCCGGATTCAATAGGGTCTCTAACGCAGCTGACCTTTCTAGCATTGAACTCTAACAGGTTCAGTGGAAATATACCACGCTCCCTTGGCAATCTAACAAATATCAATTGGCTTGATCTTGCTGAAAACGAGCTTGAAGGGACTATCCCTGTCTCTGATGACCATGGACGACCAGGCCTTGACCTGCTCCTTAAGGCACAACACTTTCATATGGGGAGCAATAAGCTCTCTGGTACAATACCAGAAAAACTTTTCAACTCCAGTATGATTCTGGAACACGTGCTTTTTGACCACAATCAACTAGAGGGCAGTGTTCCTAGTTCCATTAGTTCTGTGGGGACATTGGAAGTTCTGCGCTTAGACAAGAATGGATTAACAGGGGGCGTGCCGGCAAACTTAAACAGACTCGGAAAACTAAGCGAAATCTATTTATCTCACAATAAGCTAAATGGAAGTCTGCCTGATTTTACTGGAATGAATAGTCTCACATACGTGGACATGAGCGACAATGCTTTCAATGCCTCTAATGTACCTTCATGGGTTTCAAGTCTGCCAGAACTGACAACAGTGATACTTGGGCAGAACCAGCTCGGTGGCATGCTAAATCTCAGTAGCTATAGCAAAAGTCTGCAACTCATAAATTTGGAGAGTAATGACATAACAGAGATTGAACCGCGAAACAATCTACCAAGTTTTGAAATAAGACTAGCTAACAACCCAGTTTGTCGTGAAAGTGGATCTTCTGAGAATAGTTACTGCAAAGAAGCAGTACGAAATCCCTCGTCTTATTCAACACCACCAAATAATTGTTCTCTTCCACCTTGCAGTTCTGATCAGATTGCCAGCCCAAATTGTATATGTGCATATCCCTATACTGGACTTCTTATATCGAGAGCTCTTAGTTTCTCAAACTTCAGTGACGCAAGTTACTATAGGGAGCTTGAGCAGTCTCTGATGGATACTTTCCGAAACCAAAGCATTCCAGTGGATTCAGTTGCTCTTAGTAACCCCATGATAAATTCTACTTCTGATAACTTTGAATTGACTCTTCAATGCTTCCCCTCGCAAAGCGATCGTTTCAATTCAACTGGAGTTTTAACCATTGCTTTTCTGCTTAGTAACCAAATTTATAAGCCCCCAGAGTTCTTCTCCCCATACGTCTTCAAGGGTGCTAATTATGATTACACAGGAGGAGAACCAAATGGATCAAAGTCATCACATACCGGGGTTATTGTTGGTGCTGTAGTTGCTGTTGTGGTCTTTATTGTACTGGCATCCCTTGCAGGGATGTATGCCATTCGCCAGAAAAGAAGAGCAGAAAGATCTGCAGGGTTGAACCCTTTTGCTAATTGGGATCAGAATAAGAATAGTGGCACTGCTCCTCAGTTGAAAGGAGGACGATGGTTTTCTTTTGATGACCTAAGGAAGTACACCAACAACTTCTCAGAAACCAATACTATTGGATCTGGAGGCTATGGACAGGTTTACCAAGGAACACTTCCCTCTGGGGAGTTGGTTGCTATCAAACGGGCTGCAAAAGAATCTATGCAGGGTGCTGTTGAGTTTAAAACCGAGATTGAACTTCTATCAAGGGTCCATCACAAGAATCTCGTTAGTCTTGTGGGTTTCTGTTTTGAGAAGGGTGAACAAATGCTGGTGTATGAGTACATTCCCAATGGCACTTTAATGGATAGTCTCTCAGGAAAGTCTGGGATCTGGATGGATTGGATAAGGAGACTTAAAGTAGCATTAGGTGCAGCCAGGGGTCTAGCTTATCTTCATGAACTTGCTAACCCACCAATCATACACAGGGACATCAAATCTGGCAATATCTTACTTGATCATCACCTCAATGCAAAAGTTGCTGATTTTGGTCTCTCCAAACTTCTTGTTGATAGTGAAAGGGGCCATGTCACTACTCAAGTCAAAGGGACAATGGGATACTTGGATCCTGAATATTACATGACCCAGCAGTTGACAGAAAAGAGTGATGTATATAGCTATGGAGTGCTAATGCTGGAACTAGCAACAGCAAGAAGGCCAATAGAGCAAGGAAAGTATATTGTAAGAGAAGTAATGAGGGTAATGGACACTTCAAAAGATTTATACAACCTTCATTCCATTCTAGATCCAACCATAATGAAAACAAAACCAAAAGGTTTAGAAAAGTTTGTAACGTTGGCAATGAGGTGTGTCAAAGAATATGCAGCTGAGAGGCCTACAATGGCTGAGGTTGTAAAAGAGATTGAGAGCATAATCGAGCTTGTTGGATTGAACCCGAATTCTGAATCAGCTACAACATCAGAAACTTACGAGGAAGCAGGTGGAGGAAATGCCCAACATCCTTACAGGGAAGAAGATTTTAGCTATAGTGGAATGTTTCCATCAACAAGGGTAGAACCTCAATAG 2790 0.4237 MDQRHKVILLQLLLFQVLLVASQTDSRDYSALNSLAQSWSNKPQSWVGQDPCSGWDGIRCSNTRITQLRVPGLNIGGQLSSAIESLSELDTLDLSYNTRLTGTIPEAIGNMKNLKSLSLVGCGFSGPIPDSIGSLTQLTFLALNSNRFSGNIPRSLGNLTNINWLDLAENELEGTIPVSDDHGRPGLDLLLKAQHFHMGSNKLSGTIPEKLFNSSMILEHVLFDHNQLEGSVPSSISSVGTLEVLRLDKNGLTGGVPANLNRLGKLSEIYLSHNKLNGSLPDFTGMNSLTYVDMSDNAFNASNVPSWVSSLPELTTVILGQNQLGGMLNLSSYSKSLQLINLESNDITEIEPRNNLPSFEIRLANNPVCRESGSSENSYCKEAVRNPSSYSTPPNNCSLPPCSSDQIASPNCICAYPYTGLLISRALSFSNFSDASYYRELEQSLMDTFRNQSIPVDSVALSNPMINSTSDNFELTLQCFPSQSDRFNSTGVLTIAFLLSNQIYKPPEFFSPYVFKGANYDYTGGEPNGSKSSHTGVIVGAVVAVVVFIVLASLAGMYAIRQKRRAERSAGLNPFANWDQNKNSGTAPQLKGGRWFSFDDLRKYTNNFSETNTIGSGGYGQVYQGTLPSGELVAIKRAAKESMQGAVEFKTEIELLSRVHHKNLVSLVGFCFEKGEQMLVYEYIPNGTLMDSLSGKSGIWMDWIRRLKVALGAARGLAYLHELANPPIIHRDIKSGNILLDHHLNAKVADFGLSKLLVDSERGHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSYGVLMLELATARRPIEQGKYIVREVMRVMDTSKDLYNLHSILDPTIMKTKPKGLEKFVTLAMRCVKEYAAERPTMAEVVKEIESIIELVGLNPNSESATTSETYEEAGGGNAQHPYREEDFSYSGMFPSTRVEPQ 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00028 929 FunFam Leucine-rich repeat protein kinase family protein 575 683 - -
Vium3104g00028 929 Gene3D Transferase(Phosphotransferase) domain 1 684 896 - -
Vium3104g00028 929 Pfam Leucine rich repeat 241 298 IPR001611 GO:0005515
Vium3104g00028 929 CDD STKc_IRAK 614 879 - -
Vium3104g00028 929 SMART serkin_6 608 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3104g00028 929 FunFam Leucine-rich repeat family protein 27 181 - -
Vium3104g00028 929 Gene3D Phosphorylase Kinase; domain 1 578 683 - -
Vium3104g00028 929 FunFam Leucine-rich repeat protein kinase family protein 183 282 - -
Vium3104g00028 929 ProSiteProfiles Leucine-rich repeat profile. 336 357 IPR001611 GO:0005515
Vium3104g00028 929 Pfam Protein kinase domain 609 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3104g00028 929 SUPERFAMILY L domain-like 59 369 - -
Vium3104g00028 929 MobiDBLite consensus disorder prediction 888 929 - -
Vium3104g00028 929 Gene3D Ribonuclease Inhibitor 283 382 IPR032675 -
Vium3104g00028 929 SUPERFAMILY Protein kinase-like (PK-like) 594 887 IPR011009 -
Vium3104g00028 929 PANTHER RECEPTOR-LIKE PROTEIN 55 37 879 - -
Vium3104g00028 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 728 740 IPR008271 GO:0004672|GO:0006468
Vium3104g00028 929 Gene3D Ribonuclease Inhibitor 23 183 IPR032675 -
Vium3104g00028 929 Gene3D Ribonuclease Inhibitor 184 282 IPR032675 -
Vium3104g00028 929 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 684 892 - -
Vium3104g00028 929 ProSiteProfiles Protein kinase domain profile. 608 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3104g00028 929 ProSitePatterns Protein kinases ATP-binding region signature. 614 640 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00028 Vium-Chr3104 185682 192918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3104g00028 8 929 Receptor kinase-like Gene Family AT5G49760 52.156 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vium3104g00028 Pkinase 7.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00028 - - gmx:100786172 1587.01