Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00026 ATGGCTTCTTCTAACAGACACTGGCCGAGCATGTTCAAGTCTAAGCCCTGCAACCCTCACCACCAATGGCAGCATGACATCAACTCCTCCCTCATCTCAACTGGTTGCCACAGAAGCCCTTACACTTCAGGTACGGGTTGTGAAGAGAGAAGTCCGGAGCCAAAGCCAAGGTGGAATCCAAAACCTGAGCAAATTCGGATTCTGGAAGCTATATTCAACTCAGGAATGGTGAATCCTCCTAGGGATGAAATAAGAAAGATAAGGGCACAGTTACAAGAGTATGGCCAAGTGGGTGATGCAAACGTATTCTATTGGTTTCAGAACCGCAAATCAAGGAGCAAACACAAGCTTCGCCATCTCCAAAACACGAAAAACCAGAACCTTGAAGCTCAACAAAACCCCACATCTCTCCCTCAAATCACTGCACCATCATCCTCGTCTTCCTCATCTGAGAAATCCTCTCCAAAAGAATTAATACCTACCAAGGTATTTTCCATCGGATTCTCTAACGTCACCGATGTGGTACCTAATTCTCCGACTACTTCTGTGAACCAGACCTATTTTCAGACTCACAACGAGTCTTCCATGCTTCCACCCCCACCTGCTGCTGCTGCCGCACAAACTGGGGGTTTCTTCTTCCCAGTGCAACATCATGGGCAGGGAGTACCACCTAGTACGGTGGCATCTCAAGGGTTTTGCTTCTCGGAGCTGTCCAATGTTGTTCAACTTCAGTCACCTCCTCAACACAACGTTGGTCCTTGCACCAGTCTCTTGCTCAGTGAAATCGTAGGCCACGGTGGTGCTGCTTCAAAGAAAGATCTGGAACAAGACAAGAGTCTGAAAATAATGCACCAGCCCTCACTGTTTAATTTCTGTGTCACTCCCACAACAACAGCTCCTACTACTGCCTCAGCTGTACCTCCAATCACTACCTCAACCACCACTGTTCTATCCCCCGTCATTGCTCAAGTTCAAGGCATGGGAGATCCAGCTGCTGCGGCGAGATCAACGGTGTTCATTAACGATGTGGCATTCGAGGTAGCGGTGGGTCCTTTCAATGTGCGTGAAGCTTTTGGAGATGATGCTGTGCTCATCCACGCCACTGGTCAACCTGTGCTAACAAACCAATGGGGTGTCACTCTTCATTCACTCCAGCATGGTGCATGTTATTATTTGATATAG 1182 0.4814 MASSNRHWPSMFKSKPCNPHHQWQHDINSSLISTGCHRSPYTSGTGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNTKNQNLEAQQNPTSLPQITAPSSSSSSSEKSSPKELIPTKVFSIGFSNVTDVVPNSPTTSVNQTYFQTHNESSMLPPPPAAAAAQTGGFFFPVQHHGQGVPPSTVASQGFCFSELSNVVQLQSPPQHNVGPCTSLLLSEIVGHGGAASKKDLEQDKSLKIMHQPSLFNFCVTPTTTAPTTASAVPPITTSTTTVLSPVIAQVQGMGDPAAAARSTVFINDVAFEVAVGPFNVREAFGDDAVLIHATGQPVLTNQWGVTLHSLQHGACYYLI 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00026 393 SMART HOX_1 53 120 IPR001356 GO:0003677
Vium3104g00026 393 CDD homeodomain 54 116 IPR001356 GO:0003677
Vium3104g00026 393 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 393 IPR044557 GO:0003700|GO:0050793
Vium3104g00026 393 FunFam WUSCHEL-related homeobox 11 55 122 - -
Vium3104g00026 393 Gene3D - 55 121 - -
Vium3104g00026 393 ProSiteProfiles 'Homeobox' domain profile. 51 116 IPR001356 GO:0003677
Vium3104g00026 393 MobiDBLite consensus disorder prediction 39 62 - -
Vium3104g00026 393 Pfam Homeodomain 55 115 IPR001356 GO:0003677
Vium3104g00026 393 MobiDBLite consensus disorder prediction 125 156 - -
Vium3104g00026 393 SUPERFAMILY Homeodomain-like 51 120 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00026 Vium-Chr3104 169695 172868 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3104g00026 1 393 Wox Gene Family AT2G33880 46.934 5.02e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium3104g00026 Homeodomain 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00026 - - pvu:PHAVU_006G179900g 712.605