Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00025 ATGGGAACCAACAAAAACTACGAGGAACAGAGCAGGCTCTCCTTTTCTCAATTCCAAACAGAGTTCTTACCCTTCAACGAGAACGACCCTCAGGACATGGTCATATACCAAGTTCTCAACGAGGCCAATGCTCTCTCCAACACATTCCACCCTCACCAACGACTCCACCAACCGCAATTGGGCCTCGAGCCCACCAGAAACATCGCCAAAAAACACTACAGAGGAGTTCGCCGCCGACCCTGGGGGAAGTACGCCGCCGAGATTCGGGACTCCGCACGCCACGGCGCCAGAATATGGCTCGGCACCTTCCAGACCGCCGAAGAGGCCGCCATGGCTTACGACCGCGCCGCCTTCAAGATGAGAGGCGCCAAGGCTTTGCTGAATTTCCCAGCCGAAATCGTGGCTGCGGCCTCGGAGTCATCGTTCAATAATAATAATAATAATAATAATAACAACGATGCTGTTTCTGATTGTAGTGGTGGAAGCTCTTGCACCACGAACAATTCCACTCAGGTAAATGGGTCTCGGTCAGAAAGCACAAGTAGCACTAGTTAG 555 0.5225 MGTNKNYEEQSRLSFSQFQTEFLPFNENDPQDMVIYQVLNEANALSNTFHPHQRLHQPQLGLEPTRNIAKKHYRGVRRRPWGKYAAEIRDSARHGARIWLGTFQTAEEAAMAYDRAAFKMRGAKALLNFPAEIVAAASESSFNNNNNNNNNNDAVSDCSGGSSCTTNNSTQVNGSRSESTSSTS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00025 184 CDD AP2 71 131 IPR001471 GO:0003700|GO:0006355
Vium3104g00025 184 SMART rav1_2 72 136 IPR001471 GO:0003700|GO:0006355
Vium3104g00025 184 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Vium3104g00025 184 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Vium3104g00025 184 Gene3D AP2/ERF domain 71 132 IPR036955 GO:0003700|GO:0006355
Vium3104g00025 184 Pfam AP2 domain 72 122 IPR001471 GO:0003700|GO:0006355
Vium3104g00025 184 SUPERFAMILY DNA-binding domain 72 132 IPR016177 GO:0003677
Vium3104g00025 184 PANTHER DNA-BINDING DOMAIN 55 171 IPR044808 GO:0003700|GO:0009873
Vium3104g00025 184 FunFam Ethylene-responsive transcription factor 2 71 132 - -
Vium3104g00025 184 MobiDBLite consensus disorder prediction 144 184 - -
Vium3104g00025 184 ProSiteProfiles AP2/ERF domain profile. 72 130 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00025 Vium-Chr3104 157644 158355 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3104g00025 23 133 AP2-EREBP Transcription Factor Family AT5G47220 48.462 5.62e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium3104g00025 AP2 6.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00025 K13433 - gmx:100811533 258.07