Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00024 ATGGATATTCATAGTAATCACGGTGCAACTTCTGAAGGGATTCTTGAGAATGTATGGGCCAAAATTATGAGCAGCGATAAAGCAGATGGAAGAAAAGGTGACGCTGCAGAGTCTTGTAACTCTTGGGAAGAACTTCCTCACCTTGATGGAAGAGAAGGGTCCATGGAAATTCTACAAAGACTTCCAAGTTTAGGGAGGTGGATATCAATGGGAGCTGATTTCTGGGAAGAAGTTTTAGATGGTATTGTTCTACCTAACACAAGCAATACAGAATACTGTAGCGATAACAACATTGAAATTGGAAGTGCTGGTGAATGTAATAACAAGGTGGAAGGTGGTGTGAGAATGGAGAAGGAAGTTAGAAAACAGTACAGAGGAGTTAGGAGAAGACCTTGGGGTAAATATGCTGCAGAGATAAGAGACTCATCGAAGAAAGGTGCAAGAGTTTGGCTTGGAACATTTGAAACAGCTGAAGAAGCTGCTTTGGCTTATGACAAGGCCGCTTTGAGGATTAGGGGTCCAAAGGCATACCTTAATTTCCCACTTGAGAGGGTTGCAAAGGCTTTAGGATGTGACAAGAAGGAAAGTTTGATCAAGTCTAGGAAGAGGGAAGTGTTTGATGATGATACGATGAATGAAGAACCTGCAAGAAAAAAGTTGGAATGCATGGTAGAAAATGAACTAGGTGTTTTTGTATTTCAGGATCTAGGAAGTGATTACTTGGACAGTTTGCTGTCCTCTTTTTGA 747 0.4123 MDIHSNHGATSEGILENVWAKIMSSDKADGRKGDAAESCNSWEELPHLDGREGSMEILQRLPSLGRWISMGADFWEEVLDGIVLPNTSNTEYCSDNNIEIGSAGECNNKVEGGVRMEKEVRKQYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFETAEEAALAYDKAALRIRGPKAYLNFPLERVAKALGCDKKESLIKSRKREVFDDDTMNEEPARKKLECMVENELGVFVFQDLGSDYLDSLLSSF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00024 248 ProSiteProfiles AP2/ERF domain profile. 123 181 IPR001471 GO:0003700|GO:0006355
Vium3104g00024 248 Gene3D AP2/ERF domain 122 183 IPR036955 GO:0003700|GO:0006355
Vium3104g00024 248 Pfam AP2 domain 123 173 IPR001471 GO:0003700|GO:0006355
Vium3104g00024 248 CDD AP2 122 181 IPR001471 GO:0003700|GO:0006355
Vium3104g00024 248 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Vium3104g00024 248 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Vium3104g00024 248 SMART rav1_2 123 187 IPR001471 GO:0003700|GO:0006355
Vium3104g00024 248 SUPERFAMILY DNA-binding domain 123 182 IPR016177 GO:0003677
Vium3104g00024 248 FunFam Ethylene-responsive transcription factor 2 122 183 - -
Vium3104g00024 248 PANTHER DNA-BINDING DOMAIN 117 240 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00024 Vium-Chr3104 154645 155767 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3104g00024 14 192 AP2-EREBP Transcription Factor Family AT4G18450 47.802 2.56e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium3104g00024 AP2 2.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00024 - - gmx:100820226 380.178