Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium3104g00024 | ATGGATATTCATAGTAATCACGGTGCAACTTCTGAAGGGATTCTTGAGAATGTATGGGCCAAAATTATGAGCAGCGATAAAGCAGATGGAAGAAAAGGTGACGCTGCAGAGTCTTGTAACTCTTGGGAAGAACTTCCTCACCTTGATGGAAGAGAAGGGTCCATGGAAATTCTACAAAGACTTCCAAGTTTAGGGAGGTGGATATCAATGGGAGCTGATTTCTGGGAAGAAGTTTTAGATGGTATTGTTCTACCTAACACAAGCAATACAGAATACTGTAGCGATAACAACATTGAAATTGGAAGTGCTGGTGAATGTAATAACAAGGTGGAAGGTGGTGTGAGAATGGAGAAGGAAGTTAGAAAACAGTACAGAGGAGTTAGGAGAAGACCTTGGGGTAAATATGCTGCAGAGATAAGAGACTCATCGAAGAAAGGTGCAAGAGTTTGGCTTGGAACATTTGAAACAGCTGAAGAAGCTGCTTTGGCTTATGACAAGGCCGCTTTGAGGATTAGGGGTCCAAAGGCATACCTTAATTTCCCACTTGAGAGGGTTGCAAAGGCTTTAGGATGTGACAAGAAGGAAAGTTTGATCAAGTCTAGGAAGAGGGAAGTGTTTGATGATGATACGATGAATGAAGAACCTGCAAGAAAAAAGTTGGAATGCATGGTAGAAAATGAACTAGGTGTTTTTGTATTTCAGGATCTAGGAAGTGATTACTTGGACAGTTTGCTGTCCTCTTTTTGA | 747 | 0.4123 | MDIHSNHGATSEGILENVWAKIMSSDKADGRKGDAAESCNSWEELPHLDGREGSMEILQRLPSLGRWISMGADFWEEVLDGIVLPNTSNTEYCSDNNIEIGSAGECNNKVEGGVRMEKEVRKQYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFETAEEAALAYDKAALRIRGPKAYLNFPLERVAKALGCDKKESLIKSRKREVFDDDTMNEEPARKKLECMVENELGVFVFQDLGSDYLDSLLSSF | 248 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium3104g00024 | 248 | ProSiteProfiles | AP2/ERF domain profile. | 123 | 181 | IPR001471 | GO:0003700|GO:0006355 | |
Vium3104g00024 | 248 | Gene3D | AP2/ERF domain | 122 | 183 | IPR036955 | GO:0003700|GO:0006355 | |
Vium3104g00024 | 248 | Pfam | AP2 domain | 123 | 173 | IPR001471 | GO:0003700|GO:0006355 | |
Vium3104g00024 | 248 | CDD | AP2 | 122 | 181 | IPR001471 | GO:0003700|GO:0006355 | |
Vium3104g00024 | 248 | PRINTS | Ethylene responsive element binding protein signature | 147 | 163 | IPR001471 | GO:0003700|GO:0006355 | |
Vium3104g00024 | 248 | PRINTS | Ethylene responsive element binding protein signature | 124 | 135 | IPR001471 | GO:0003700|GO:0006355 | |
Vium3104g00024 | 248 | SMART | rav1_2 | 123 | 187 | IPR001471 | GO:0003700|GO:0006355 | |
Vium3104g00024 | 248 | SUPERFAMILY | DNA-binding domain | 123 | 182 | IPR016177 | GO:0003677 | |
Vium3104g00024 | 248 | FunFam | Ethylene-responsive transcription factor 2 | 122 | 183 | - | - | |
Vium3104g00024 | 248 | PANTHER | DNA-BINDING DOMAIN | 117 | 240 | IPR044808 | GO:0003700|GO:0009873 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium3104g00024 | Vium-Chr3104 | 154645 | 155767 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium3104g00024 | 14 | 192 | AP2-EREBP Transcription Factor Family | AT4G18450 | 47.802 | 2.56e-43 | 147 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Vium3104g00024 | AP2 | 2.6e-15 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium3104g00024 | - | - | gmx:100820226 | 380.178 |