Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00019 ATGCATTTCCTTTCAACTAATCCTCAAGGAATAATAATGAATTTTCTCTTCTTTTATGTACTCATCTCCCTTGTTCTTATTAATGGCTACCAAGATGAAGCTACAACAATAGACAACCAAGTTATATCTGTTGGGGCAATCATTGATGTGAATTCTCGCATTGGGAAAGAACAGCAAATGGCCATGGACATTGCAGCTCGAAGTTACAATAGCACTTCAAAGACCTACAAGTTGGCTCTCTATTTCCGGAACTCCACCGACAATCCTCTTAAAGCCATCACTCTTGCTGAAGAGATGATTGATAAGCAAAAGGTGGAAGTGATTATCGGGATGCACAGATGGTCAGAAGCAGCTCTAGTGGCTGAAATAGGAAGCCAAACTCAAGTTCCTATTATAGCATTTGCAGAACCCACCGTTACCCCGCCGTTGATGAGTAATAGGTGGCCTTTTTTGGTGAGAATGACTAGGAGTGATTTATCATATATCAAATGCATTGTAGATATAGTGACAGCTTTTGGTTGGCAGAGAGTAGTAGCTATCTATGAAGATGATGCATATGGAGGTGACTATGGCATGCTAGCACTGCTATCTGAGGCCCTCCGGGATGTGAGTTCATCGATTGATTATCACTTAGTTCTTCCACCTATTTCTTCTCTGCATGAACCAGGAGGGTTTATACGTGAAAAACTGTTGAAGTTGTTGCAAACCCAATCTCGCGTTTTCATTGTGCTGAGATCTTCATTAGAAATGGCTATCCATTTGTTTAAAGAAGCCTCAAAAATGGGATTCGTGGACACAGAATCAGCATGGATACTTCCAGAGAGCATAACAAATGTGCTGGACTCTGTCAACAAGTCTGCTATTTCCTATATGGATGGAGCTTTAGGAATCAAAACGTACTACTCCGAAATGAGCCCCGAGTACCGAGATTTTGAGGCTGAATTCTGGAGAACATTTTGGTCCAAGAATGTCGAGGAAGATAACCGCTACCCCGGATTTTATGCATTGCAAGCTTATGATGGCATTAAAATTGTGACCCAAGCAGTAGACAGAATGACCAATAGAAACACTAGGAGCCCAAAGAATTTACTTGGAGAAATACTGCGTAGCAGTTTTCTCGGTTTAAGCGGTCGTATTCAATTCGAAGACGGGAAACTCCAGCAGACTTCTATTTTAAGGATGGTAAATGTGGCCGGGAAGAGTTACAAGGAACTATGCTTTTGGAGTGAACAATATGGGTTCACCAAAGACCTCCCTACAGGAAAAGGTGGACATTCTGGCGCTGGTAATACAGAATGTTTCAGTGCTGTTCGGTGGCCTGGGAATCTGAAAAGGGATCCAAAAGGCTGGAATATGCCTACTAAACAAAATCCTATGAAAATTGCAGTCCGAAGCAGAACCTCTTTTTCCAAGTTTGTCAAGGTTGATTATGAACATGAGGGCGCTCCTGCAACATATAGTGGATTTTGTATCGATATTTTTCAGGGTGTGCTCGACCTTTTGGGGTATGACTTGCCATACGATTATTATCCTATTGATGGAACCTATAATGATTTGGTTCAGCTTGTCTATAACAAGAGTTATGATGCCGTAGTTGGGGACATGACCATACTAGAAGAAAGAATGCAGTATGTGGATTTTACAGTGCCATATGCAGAATCAGGGTTGACAATGGTAGTTCCATCAAAGTCTAAAGAGTCGGCATGGATGTTCACAAAGCCCTTTACCTGGGAAATGTGGATGGTTACGGGTGGCATCTTGATTTACACAATGTTAGCAGTTTGGTACCTTGAGAGGGAATTCAATCCCGAGTTTCATGGCAATTGGGGCAGCCAAATCAGCACAGCTCTTTGGTTTACCTTCTCCTCTTTGTTTTTCGCTCACAGGGAAAAAATGCAGAGCAACTTAACTCGCATCGTGATGGTCTCATGGCTCTTGCTAGTTCTGATCCTTAACTCATCCTACACTGCTAACCTTTCTTCAATGCTCACGGTTAAACAACTGGAACTGAATGTCCCAGATATTCAGCTGTTGAAGAGGAACAACAAGACAATTGGTTGCGATGGTGACTCATTTGTTAGGTCGTTCCTAGAGAAAGTAGAAGGGTTCCCGCCTGGGAACATAAAAAATATCACTGACGAATACACGTATGATGGTTTTTTTCAAAATAACAGCATAGCAGCTGCCTTTCTTGAACTCCCATACGAAAAGGTATTCATCACTGAATACTGTAACAAATACACCGGTTCCACTCCCAGAACCAGATTTGGAGGACTGGGCTTTATGTTCCAGAAAGGATCGCCGGTGGCCAGAGATGTGTCAAAAGCTATATTACATATGTCAGAGAATGCAGAGCTGAAGAGGTTGGAGGAGAAGTGGTTGATTAGCTCCGGCAAGTGCTCCAACACGACCTCCGACACCAACAACCCGGAAAGTTTGAAGCTAAGAAGTTTATGGATTTTATATGTCATCTCTGGTGCTACTTCCACCATTTGTCTGCTACTATCAACCATCCAATCTCTGGTAAAATCAACTCAGCAACGCCAACGCGTGGCACCAGAAGGCAATGACACCCCAGATTATCAAAATGTGTGGGAAAAGGTGATTGCACATGTAAAGCAGATTTACAACAAAAAGATCAATAATTCAAGAGAGACACGGACACAGGTTGTTACTGATTTTCTTCCAGACAGGGTCACGAGAGCATGA 2709 0.4245 MHFLSTNPQGIIMNFLFFYVLISLVLINGYQDEATTIDNQVISVGAIIDVNSRIGKEQQMAMDIAARSYNSTSKTYKLALYFRNSTDNPLKAITLAEEMIDKQKVEVIIGMHRWSEAALVAEIGSQTQVPIIAFAEPTVTPPLMSNRWPFLVRMTRSDLSYIKCIVDIVTAFGWQRVVAIYEDDAYGGDYGMLALLSEALRDVSSSIDYHLVLPPISSLHEPGGFIREKLLKLLQTQSRVFIVLRSSLEMAIHLFKEASKMGFVDTESAWILPESITNVLDSVNKSAISYMDGALGIKTYYSEMSPEYRDFEAEFWRTFWSKNVEEDNRYPGFYALQAYDGIKIVTQAVDRMTNRNTRSPKNLLGEILRSSFLGLSGRIQFEDGKLQQTSILRMVNVAGKSYKELCFWSEQYGFTKDLPTGKGGHSGAGNTECFSAVRWPGNLKRDPKGWNMPTKQNPMKIAVRSRTSFSKFVKVDYEHEGAPATYSGFCIDIFQGVLDLLGYDLPYDYYPIDGTYNDLVQLVYNKSYDAVVGDMTILEERMQYVDFTVPYAESGLTMVVPSKSKESAWMFTKPFTWEMWMVTGGILIYTMLAVWYLEREFNPEFHGNWGSQISTALWFTFSSLFFAHREKMQSNLTRIVMVSWLLLVLILNSSYTANLSSMLTVKQLELNVPDIQLLKRNNKTIGCDGDSFVRSFLEKVEGFPPGNIKNITDEYTYDGFFQNNSIAAAFLELPYEKVFITEYCNKYTGSTPRTRFGGLGFMFQKGSPVARDVSKAILHMSENAELKRLEEKWLISSGKCSNTTSDTNNPESLKLRSLWILYVISGATSTICLLLSTIQSLVKSTQQRQRVAPEGNDTPDYQNVWEKVIAHVKQIYNKKINNSRETRTQVVTDFLPDRVTRA 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00019 902 PIRSF IGluLR_plant 10 895 IPR017103 -
Vium3104g00019 902 Pfam Receptor family ligand binding region 59 387 IPR001828 -
Vium3104g00019 902 SMART GluR_14 460 796 IPR001320 GO:0015276|GO:0016020
Vium3104g00019 902 Pfam Bacterial extracellular solute-binding proteins, family 3 483 794 IPR001638 -
Vium3104g00019 902 CDD PBP1_GABAb_receptor_plant 43 418 IPR044440 -
Vium3104g00019 902 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 871 IPR015683 -
Vium3104g00019 902 SUPERFAMILY Periplasmic binding protein-like II 435 794 - -
Vium3104g00019 902 Gene3D - 47 389 - -
Vium3104g00019 902 Gene3D - 459 567 - -
Vium3104g00019 902 Gene3D - 731 801 - -
Vium3104g00019 902 SUPERFAMILY Periplasmic binding protein-like I 39 450 IPR028082 -
Vium3104g00019 902 FunFam Glutamate receptor 458 569 - -
Vium3104g00019 902 Gene3D - 568 699 - -
Vium3104g00019 902 Pfam Ligand-gated ion channel 795 826 IPR001320 GO:0015276|GO:0016020
Vium3104g00019 902 CDD GluR_Plant 457 794 - -
Vium3104g00019 902 Gene3D - 157 410 - -
Vium3104g00019 902 FunFam Glutamate receptor 161 329 - -
Vium3104g00019 902 FunFam Glutamate receptor 568 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00019 Vium-Chr3104 121648 125643 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3104g00019 7 835 Ion Channels AT2G29120 32.247 8.17e-141 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00019 - - gmx:100818619 1420.22