Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00018 ATGAATTTTCATACCCAAACTTCCAAAGCAGTATCAAATGTTTTGCTTCGGCATTTTCTAACAATTTTGCTTCTCTTCATTGGCGCTCAGGTTGCCTACAGTTTCCAAAATACAATTGTTGGCGTGCTCATTGATGTCAATTCAAAGACAGGAGAACAACAGAGAATGGCCATGCAAATTGCAGCTCAACGTTTCAACAATGATTCACAGAACCACTATATAAAACTTTTCTTCCGCGACTCTGGTGGAATTCCATTACAAGCAGCTTCATCTGCTGAAGAACTAATCATTAAGAAAAAAGTTGAAGTCATTCTTGTCATGGGGACATGGCAAGAAGCAACTCTAGTTGCTGACCAGGGAAACAGTGCTCAAATTCCAATTATTTCATTTTCTTCTCCCCCAATGATCCCTCCTGATTCAATGCAACATCGTTGGCCCTTTCTGATTCAAATGGCAAAAGATCAGGCTGCACAAATAAACTGCATTGCAGATATTATCCATGAGTTCAATTGGCGGAAGGTTATAGCTATATACGAAGACAACCCTTACAGTGGTGATTCTGGAATGTTAAGCCTCTTCTCTGAGGCTCTCCAAAAGGGTGACTCACAGATAGAGAACCGGTTAGTTCTTCCATCGTTCACTTCTTTATCTGATCCGAAAGGGTTTGTTCTGAACGAATTGCTTGAGCTTTTGCCACTGCAATCTCGTGTTTTTGTTGTACTTCAAGCAACATTCCCAATGATAACCCATTTGTTCAGAGAAGCTAAGAAAATTGGATTGTTGGGGAAAGATTCAGCTTGGATAATGAACGAGGGAATCACAAGTATGTTAGACTTTGCAAACAAATCTGTTTTGTCCTCTATGGAAGGTGCTTTAGGAATCAAAGCCTATTATTCTACAAGTTCTCTTTCTTATAAGCAATTGCAGGATGATTTCCAACCTGAGCATGCAAAACCAGGATCAGATGCATTACAAGCTTATGATAGCGTTACATTAATCACAAAGGCCTTGGAGAGAATGAATGGGAAATCTAGTAATTCAATGGTGTTCTTGGAAAAATTGTTATCTAGCGATTTCAATGGTTTAAGTGGTAATATAAGATTCAAAGATGGTCATCTATTCAACACTCCGGTGTTGAGAGTGATAAACGTGGTTAACAAGGAATACAAGGAATTAGATTTTTGGACCCCGAAATTGAAGTTCGGTAAATCTCTTAAAATACTGAAAGACAGAGAAACAAAAGGAGGCCTAACTTCTACTGCTCCTAAGGGATGGAAACTGCCGACTTACGCAGAACCTTTAAAAGTGGCAATTCCTATAAACCCTGCTTTCGAAAATTTCCTGAAGGAAGACCCTCCAAAGAAATATGATGGTTTCTGTATTCGTCTTTTCCTCGAGACAATAAAAATTCTGAGTTACAAGTATGGTGACATTCCCTATGTATTTGAGTCCTTCAATGAATCCTATGATAAACTTCTACTGAATGTAATAAACAAGTCCCACCATGCTATTGTCGGAGATTTAACAATACTCGCCAACCGATCAAAGGATGTGTCGTTCACTCAACCATACACTGATTCGAGCTTATCAGTTATATTTCCAATAGAGACTGAAGGATCGATGTGGTTGTTTATGCAACCCTTTAGCTGGGAAATGTGGCTTGCTACTATTTGCATTCTCATCTACACAACGTTCACCGTATGGTTCCTGGAGCATGAGTTCAATCCAGATTTTGGTGGTCCATTGGAAAATCAGATCAGCACCACACTGTGGTTTGCCTTTTCTTCTCTATTTTTTGCTCACAGGGAGAGAATAAGAAGCAACTCTGCACGAGTAGCAGTTGCTGCATGGCTTTTTCTTGTGTTTGTTATAAACTCAAGCTACACTGCCAACTTTTCCTCAATGCTAACTGTCAAACGATGGTCACGAAGAGATATTGAGTGGCTAAAGCAAAACAATTTCTCAGTTGGCTGTGAAAACCGCAGTTCCTTTGTAAAGAACTACATGATAGATGTGTATAAGTTCCATCCAAATCAAATAATAAACGTTCATGGAGAACATGACATTGTAGATAAATTCAAAAGCAAAAAAATGCATGCTCTCTTTTTTGAAAGCCCGTATGAGAGGGTTTTCTTGAACAAGTACCCCAGGGATTACACTGCAATTACAGCTGCCTATAAATTTGGAGGACTTGGCTTTGTATTTCAAAAAGGATCTCCCATGGCTAAAGAGTTCTCTGAAGCCATTTTAGAACTAGCAGAAAATGGAAAACTAAAATCTTTGGAAGAGCAATGGTTGACTCCTCCGCAATGCTCAAACTCAAACCGTTCTCCAGAAACTGAGGGCCTGACCCTCCCCAACTTCTGGATTCTCTATGTCATGTGTGCTTTCATATGCACCATCTGCTTGGTGCTGTCTGTCAGCAGCCAAACATAA 2436 0.3961 MNFHTQTSKAVSNVLLRHFLTILLLFIGAQVAYSFQNTIVGVLIDVNSKTGEQQRMAMQIAAQRFNNDSQNHYIKLFFRDSGGIPLQAASSAEELIIKKKVEVILVMGTWQEATLVADQGNSAQIPIISFSSPPMIPPDSMQHRWPFLIQMAKDQAAQINCIADIIHEFNWRKVIAIYEDNPYSGDSGMLSLFSEALQKGDSQIENRLVLPSFTSLSDPKGFVLNELLELLPLQSRVFVVLQATFPMITHLFREAKKIGLLGKDSAWIMNEGITSMLDFANKSVLSSMEGALGIKAYYSTSSLSYKQLQDDFQPEHAKPGSDALQAYDSVTLITKALERMNGKSSNSMVFLEKLLSSDFNGLSGNIRFKDGHLFNTPVLRVINVVNKEYKELDFWTPKLKFGKSLKILKDRETKGGLTSTAPKGWKLPTYAEPLKVAIPINPAFENFLKEDPPKKYDGFCIRLFLETIKILSYKYGDIPYVFESFNESYDKLLLNVINKSHHAIVGDLTILANRSKDVSFTQPYTDSSLSVIFPIETEGSMWLFMQPFSWEMWLATICILIYTTFTVWFLEHEFNPDFGGPLENQISTTLWFAFSSLFFAHRERIRSNSARVAVAAWLFLVFVINSSYTANFSSMLTVKRWSRRDIEWLKQNNFSVGCENRSSFVKNYMIDVYKFHPNQIINVHGEHDIVDKFKSKKMHALFFESPYERVFLNKYPRDYTAITAAYKFGGLGFVFQKGSPMAKEFSEAILELAENGKLKSLEEQWLTPPQCSNSNRSPETEGLTLPNFWILYVMCAFICTICLVLSVSSQT 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00018 811 FunFam Glutamate receptor 158 323 - -
Vium3104g00018 811 CDD PBP1_GABAb_receptor_plant 40 405 IPR044440 -
Vium3104g00018 811 Pfam Receptor family ligand binding region 55 384 IPR001828 -
Vium3104g00018 811 FunFam Glutamate receptor 541 670 - -
Vium3104g00018 811 Gene3D - 430 541 - -
Vium3104g00018 811 SUPERFAMILY Periplasmic binding protein-like II 417 768 - -
Vium3104g00018 811 PIRSF IGluLR_plant 9 810 IPR017103 -
Vium3104g00018 811 SMART GluR_14 435 768 IPR001320 GO:0015276|GO:0016020
Vium3104g00018 811 Gene3D - 159 318 - -
Vium3104g00018 811 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 806 IPR015683 -
Vium3104g00018 811 Gene3D - 542 676 - -
Vium3104g00018 811 Pfam Bacterial extracellular solute-binding proteins, family 3 450 767 IPR001638 -
Vium3104g00018 811 Gene3D - 37 158 - -
Vium3104g00018 811 Gene3D - 706 773 - -
Vium3104g00018 811 SUPERFAMILY Periplasmic binding protein-like I 39 396 IPR028082 -
Vium3104g00018 811 Pfam Ligand-gated ion channel 768 797 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00018 Vium-Chr3104 115151 118536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3104g00018 9 809 Ion Channels AT2G29120 30.094 7.48e-120 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00018 - - vun:114188616 1373.61