Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3104g00015 ATGGGTTCCAAAGACAAGCATGACGACGACGAATCGCTCAGTGTAGGCCTAAAGGTGATGCTAGCAGCAGCTATCTCTTTATTTGCTGTGATCTCAATAATCATCATCGTCCATTTTAGTGTCAAATATTTCATCAGACGCCAACAAAGGAGACGCCAAAACGACCTTCTACACCAGATCACCACTCAGATTGCACCGATTGATGTCAGTTCTGTGGAGCCACGCAACCCTGGACTTCAAACTTCCATCATAGCGTCTCTGCCTAAACTATTCTACAACCAAACGGAACAGTTCAAGCGAGGTGAAGTGATAGAGTGTTCGGTTTGCCTGGCCACTGTTATGGAGGATGCAATCACTAGAGTGCTACCAAATTGTAAGCACATTTTTCATGTTGATTGTGTTGATAAATGGTTTAATTCTAACACCACGTGCCCAATTTGCCGCACTGTGGTTGACCCAAAGGTGTCACCGGAAGAAGAACATGTCCAACCCACAGCACCACCTGTTGTGGGCGGTGATGAGCTGCAAGATGGAAATGAAATGGAGAAAGTGGGGTGTTCGGGTTTGAGAATAGGATCTTTCCATAGGATGGTTAGTAACAGGGAAAGATCGGGGAGGAGTCACAGTTGTGATGAATCTACAATAGATATAGGAAGACACTGA 663 0.4525 MGSKDKHDDDESLSVGLKVMLAAAISLFAVISIIIIVHFSVKYFIRRQQRRRQNDLLHQITTQIAPIDVSSVEPRNPGLQTSIIASLPKLFYNQTEQFKRGEVIECSVCLATVMEDAITRVLPNCKHIFHVDCVDKWFNSNTTCPICRTVVDPKVSPEEEHVQPTAPPVVGGDELQDGNEMEKVGCSGLRIGSFHRMVSNRERSGRSHSCDESTIDIGRH 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3104g00015 220 MobiDBLite consensus disorder prediction 158 177 - -
Vium3104g00015 220 SMART ring_2 106 147 IPR001841 -
Vium3104g00015 220 SMART FANCL_C_2 102 156 - -
Vium3104g00015 220 SUPERFAMILY RING/U-box 93 156 - -
Vium3104g00015 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 154 IPR013083 -
Vium3104g00015 220 MobiDBLite consensus disorder prediction 198 220 - -
Vium3104g00015 220 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Vium3104g00015 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 158 - -
Vium3104g00015 220 Pfam Ring finger domain 105 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3104g00015 Vium-Chr3104 88925 89944 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3104g00015 18 220 C3H Transcription Factor Family AT2G42360 33.180 2.67e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3104g00015 K19038 - gmx:100786701 324.324