Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3103g00001 ATGTCTCTAGAGAAGAAGTTGCAGATAGGTATTGAAGACAAGCTTGCCCTCACCGAGTTCAATGGCGAGACACAACCTAATTTGGATTCAGTTATTTCTCACTACGCCCAGAGTCTTAATCAGACCAACTTACGATTCTTGGGCTACCCCACTAATCAAAACCTCAACTGTGACACATTAGCACCGTTGCTTCATTTTCATTTGAACAATGCTGGTGATCCATTTGGAGGGAGCAGCTACACCATGAATTCAACATCATTTGAAGTTTGCGTGCTTGATTGGTTTGCAAATCTATGTGAGATAGAGAAGAGCAAGTATTGGGGATACGTCACAACAGGAGGAACCGAAGGGAATCTTCATGGGATTTTAGTAGGGAGAGAACAATTGCCGGATGGGATTTTATATGCCTCACAAGATTCCCATTATTCAATCTTCAAAACCGCAAGAATGTATCGAATGCAATGCATGAAGGTTAGCAGTTTGGTCTCTGGAGAGATTGATTGTGATGAACTAAAGACATTGCTTCTTGCTCACAGGGACAAGCCAGCCATCATCAATCTCAACATCGGGACAACTATGAAAGGAGGAGTTGATGACCTTGATCTTGTAATACAAACACTTAAGGAATGTGGTTTCGCTCGCGACAGGTTCTATATTCATTGTGATGGAGCTTTGTTCGGAGCCATGTTGCCTTTTATCAAACAAGCACCAAAGATCAGTTTCAAGAAACCCATAGGAAGTATAGCTATTTCAGGGCATAAGTTTCTGGGATGTCCAATCCCATGTGGTGCTGTAATAACTCGTAAAGAATACATAAACGTATTAACTGATGTAGAATATATTGGTTCAAGAGATGTTACAATCACAGGTAGTCGTTCTGGGCATGCATCGATTTTTCTTTGGTATGCCATAAAAAGAAAAGGTTTTGTGGGACTTGAAAGCGAAGTGCATAAATGCATAGCCAATGCATCCCATTTACAACATCGATTACGAAAGGCTGGAATTGGTGCAATGTTAAACAAGTTTAGCAACATCGTTGTCTTTGAAAGACCACCAGACGAAGACTTTGCTCGTAAATGGAGTTTGGCATGTGAGGGAAACATTGCACACGTAGTAGTGATGCAACATGTTACCACTGAAATGTTGGATTCCTTTGTTGATGAATTTCTTCAAAAACGGTCC 1182 0.4095 MSLEKKLQIGIEDKLALTEFNGETQPNLDSVISHYAQSLNQTNLRFLGYPTNQNLNCDTLAPLLHFHLNNAGDPFGGSSYTMNSTSFEVCVLDWFANLCEIEKSKYWGYVTTGGTEGNLHGILVGREQLPDGILYASQDSHYSIFKTARMYRMQCMKVSSLVSGEIDCDELKTLLLAHRDKPAIINLNIGTTMKGGVDDLDLVIQTLKECGFARDRFYIHCDGALFGAMLPFIKQAPKISFKKPIGSIAISGHKFLGCPIPCGAVITRKEYINVLTDVEYIGSRDVTITGSRSGHASIFLWYAIKRKGFVGLESEVHKCIANASHLQHRLRKAGIGAMLNKFSNIVVFERPPDEDFARKWSLACEGNIAHVVVMQHVTTEMLDSFVDEFLQKRS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3103g00001 394 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 247 268 IPR021115 GO:0016831
Vium3103g00001 394 Pfam Pyridoxal-dependent decarboxylase conserved domain 133 335 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vium3103g00001 394 PANTHER - 11 394 - -
Vium3103g00001 394 Gene3D - 79 294 IPR015421 GO:0003824
Vium3103g00001 394 Gene3D Aspartate Aminotransferase, domain 1 297 393 IPR015422 GO:0003824
Vium3103g00001 394 SUPERFAMILY PLP-dependent transferases 38 390 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3103g00001 Vium-Chr3103 15655 18099 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3103g00001 189 333 Calmodulin-binding Proteins AT5G17330 29.677 8.02e-07 49.3