Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3102g00011 ATGGCGCTTCTACGTGTTGCGTGCTTAACTTCTGCAAATCAGTTATCGGCTCAAACCTATTCNCATTCCATCGCTCTCTCTTCCCTTTCCCAATCCATCAACTTCCCCAAACGCTCTTCCTTTCACCTTCCACCCTTATCCCTTACCACACCCAAACAAACCCCTATTTTCACTCTCACATGCGTTTCCACTTCCCAACAACAACCCCCGCCAGTAACCGAAGAAGAATTTTCTCGCACAAGGTTGCTCGCTCAGAACGTCCCATGGACAAGCACCCCAGAGGATATTCGTTCTTTGTTTGAAAAACATGGGAAAGTCCTCGAAGTCGAGCTTTCTATGTATAAGAAAAACAGAAACCGGGGTTTGGCCTTTGTCGAAATGGGTTCTCCAGAAGAGGCTCTTGAAGCTCTCAATAAACTCGAATCGTATGAGTTTGAGGGCCGTGTAATGAAAGTCAATTATGCTCGGCCGAAAAAGGAGAAATCCCCGCCTCCGGTGAAACCAAAATCTGGCGTCACGTTTAACTTGTTTGTTGGTAACTTGTCCTATGAAGCCAAGTCCAAGGATCTTAAGGAGTTTTTTGATTCCGGAACTAGTAAAGTTGTTAGAGCTGAGGTTGTATTTCTTGACAATCCTAGAAAGCCGTCAGGTTATGGATTTGTGTCATTCAAGTCCAAGAAAGAAGCTGAGGCTGCTCTTGCTGAGTTCCAAGGAAAGGATTTTATGGGAAGGGCAATCAGGGTGGATCGGGGTCGTCGATTTGTTCAGAAACCAGGGGATGGGAATTCAAAGTCTGTCGTAGATGCTCCTTCTGAGTTGAGTGTGAATAGGGCAGAAGCTCAAGAGCCAGCAGAGGAGACTCCAAACTCTGAAGATACTCCTGAGTTGAGTGTGAATGGGGCAGAAGCTGACAAAGCTGATTGA 924 0.461 MALLRVACLTSANQLSAQTYSHSIALSSLSQSINFPKRSSFHLPPLSLTTPKQTPIFTLTCVSTSQQQPPPVTEEEFSRTRLLAQNVPWTSTPEDIRSLFEKHGKVLEVELSMYKKNRNRGLAFVEMGSPEEALEALNKLESYEFEGRVMKVNYARPKKEKSPPPVKPKSGVTFNLFVGNLSYEAKSKDLKEFFDSGTSKVVRAEVVFLDNPRKPSGYGFVSFKSKKEAEAALAEFQGKDFMGRAIRVDRGRRFVQKPGDGNSKSVVDAPSELSVNRAEAQEPAEETPNSEDTPELSVNGAEADKAD 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3102g00011 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 157 IPR000504 GO:0003723
Vium3102g00011 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 253 IPR000504 GO:0003723
Vium3102g00011 307 Gene3D - 61 161 IPR012677 -
Vium3102g00011 307 Gene3D - 162 266 IPR012677 -
Vium3102g00011 307 PANTHER OS02G0815200 PROTEIN 74 250 - -
Vium3102g00011 307 CDD RRM_SF 86 153 - -
Vium3102g00011 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 151 IPR000504 GO:0003723
Vium3102g00011 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 247 IPR000504 GO:0003723
Vium3102g00011 307 MobiDBLite consensus disorder prediction 253 307 - -
Vium3102g00011 307 CDD RRM_SF 176 249 - -
Vium3102g00011 307 SMART rrm1_1 81 153 IPR000504 GO:0003723
Vium3102g00011 307 SMART rrm1_1 175 249 IPR000504 GO:0003723
Vium3102g00011 307 SUPERFAMILY RNA-binding domain, RBD 173 258 IPR035979 GO:0003676
Vium3102g00011 307 SUPERFAMILY RNA-binding domain, RBD 65 165 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3102g00011 Vium-Chr3102 118130 133214 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3102g00011 80 256 Eukaryotic Initiation Factors Gene Family AT3G16380 28.497 1.30e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3102g00011 - - gmx:100790439 415.616